Results 21 - 40 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26706 | 5' | -62.3 | NC_005808.1 | + | 3875 | 0.7 | 0.156717 |
Target: 5'- cGUCGCuguaGGCCG-CGcUGCCGUCGCCg- -3' miRNA: 3'- -UAGCG----CCGGUaGCaACGGCGGCGGgu -5' |
|||||||
26706 | 5' | -62.3 | NC_005808.1 | + | 32357 | 0.69 | 0.160996 |
Target: 5'- gGUCGCuGCgGUCGccGCCgaggccccgGCCGCCCAg -3' miRNA: 3'- -UAGCGcCGgUAGCaaCGG---------CGGCGGGU- -5' |
|||||||
26706 | 5' | -62.3 | NC_005808.1 | + | 34017 | 0.69 | 0.169871 |
Target: 5'- gGUCGcCGuGaCCGUCGUgucgcgccUGUCGCUGCCCGc -3' miRNA: 3'- -UAGC-GC-C-GGUAGCA--------ACGGCGGCGGGU- -5' |
|||||||
26706 | 5' | -62.3 | NC_005808.1 | + | 41283 | 0.68 | 0.215406 |
Target: 5'- cUUGuCGGCC-UgGUgGCCGUCGCCCu -3' miRNA: 3'- uAGC-GCCGGuAgCAaCGGCGGCGGGu -5' |
|||||||
26706 | 5' | -62.3 | NC_005808.1 | + | 91 | 0.67 | 0.232766 |
Target: 5'- --aGCGaGCCAuuuccagaUCGUucUGCgCGCCGUCCAa -3' miRNA: 3'- uagCGC-CGGU--------AGCA--ACG-GCGGCGGGU- -5' |
|||||||
26706 | 5' | -62.3 | NC_005808.1 | + | 18941 | 0.67 | 0.23881 |
Target: 5'- gGUCGCcuGGUgcaGUUGcUGCCGCCGCCg- -3' miRNA: 3'- -UAGCG--CCGg--UAGCaACGGCGGCGGgu -5' |
|||||||
26706 | 5' | -62.3 | NC_005808.1 | + | 16992 | 0.67 | 0.244984 |
Target: 5'- -cCGCGccGCCGUgGUUGCCaCUGCCUg -3' miRNA: 3'- uaGCGC--CGGUAgCAACGGcGGCGGGu -5' |
|||||||
26706 | 5' | -62.3 | NC_005808.1 | + | 19054 | 0.67 | 0.25129 |
Target: 5'- uGUCGgccgaGGCCAUCGaccgcgUG-CGCCGCCUg -3' miRNA: 3'- -UAGCg----CCGGUAGCa-----ACgGCGGCGGGu -5' |
|||||||
26706 | 5' | -62.3 | NC_005808.1 | + | 37706 | 0.67 | 0.25129 |
Target: 5'- -cCGUGGCCGaaaaCGagGCCGCCGUCg- -3' miRNA: 3'- uaGCGCCGGUa---GCaaCGGCGGCGGgu -5' |
|||||||
26706 | 5' | -62.3 | NC_005808.1 | + | 14383 | 0.67 | 0.257729 |
Target: 5'- -gCGUGGUCGUCGgcGUgGCCGaCCUg -3' miRNA: 3'- uaGCGCCGGUAGCaaCGgCGGC-GGGu -5' |
|||||||
26706 | 5' | -62.3 | NC_005808.1 | + | 41555 | 0.69 | 0.188942 |
Target: 5'- uUCGCGGCgaCAU-GcUGCCGCCGgCCGu -3' miRNA: 3'- uAGCGCCG--GUAgCaACGGCGGCgGGU- -5' |
|||||||
26706 | 5' | -62.3 | NC_005808.1 | + | 8213 | 0.69 | 0.179181 |
Target: 5'- cAUgGCGGCCAguUCGUgcgcgGCCG-UGCCCu -3' miRNA: 3'- -UAgCGCCGGU--AGCAa----CGGCgGCGGGu -5' |
|||||||
26706 | 5' | -62.3 | NC_005808.1 | + | 5155 | 0.69 | 0.179181 |
Target: 5'- --gGCGGCCGUCGcUGCUcaCGCCCu -3' miRNA: 3'- uagCGCCGGUAGCaACGGcgGCGGGu -5' |
|||||||
26706 | 5' | -62.3 | NC_005808.1 | + | 37677 | 0.69 | 0.16538 |
Target: 5'- cGUCGCGGgCAUCGcUGCCGaCGUuuCCAc -3' miRNA: 3'- -UAGCGCCgGUAGCaACGGCgGCG--GGU- -5' |
|||||||
26706 | 5' | -62.3 | NC_005808.1 | + | 33813 | 0.7 | 0.14449 |
Target: 5'- -gCGCGGCCGacccaUCGUgcGCCGCgugcUGCCCGa -3' miRNA: 3'- uaGCGCCGGU-----AGCAa-CGGCG----GCGGGU- -5' |
|||||||
26706 | 5' | -62.3 | NC_005808.1 | + | 33763 | 0.72 | 0.103855 |
Target: 5'- -gCGCuGGCCcgCGUUGCgGCUGgCCCGa -3' miRNA: 3'- uaGCG-CCGGuaGCAACGgCGGC-GGGU- -5' |
|||||||
26706 | 5' | -62.3 | NC_005808.1 | + | 33237 | 0.72 | 0.099326 |
Target: 5'- -aCGCGGCCGcaucaUCaagcaacugcaaaagGaUGCCGCCGCCCGc -3' miRNA: 3'- uaGCGCCGGU-----AG---------------CaACGGCGGCGGGU- -5' |
|||||||
26706 | 5' | -62.3 | NC_005808.1 | + | 19014 | 0.72 | 0.098224 |
Target: 5'- -aUGaCGGCCAUCGUcGCCccCCGCCCGc -3' miRNA: 3'- uaGC-GCCGGUAGCAaCGGc-GGCGGGU- -5' |
|||||||
26706 | 5' | -62.3 | NC_005808.1 | + | 37026 | 0.73 | 0.080709 |
Target: 5'- gGUgGCGGCCAgCGUUGgCGCCGUCg- -3' miRNA: 3'- -UAgCGCCGGUaGCAACgGCGGCGGgu -5' |
|||||||
26706 | 5' | -62.3 | NC_005808.1 | + | 1832 | 0.65 | 0.303639 |
Target: 5'- --aGUGGCCGaagaaagccaggaUGUUGCCGCCGUCUu -3' miRNA: 3'- uagCGCCGGUa------------GCAACGGCGGCGGGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home