Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26706 | 5' | -62.3 | NC_005808.1 | + | 41555 | 0.69 | 0.188942 |
Target: 5'- uUCGCGGCgaCAU-GcUGCCGCCGgCCGu -3' miRNA: 3'- uAGCGCCG--GUAgCaACGGCGGCgGGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 29996 | 0.69 | 0.190949 |
Target: 5'- cGUCGaacgGGCCAUCGUgcuccaacugcacgGCCGC-GCCCu -3' miRNA: 3'- -UAGCg---CCGGUAGCAa-------------CGGCGgCGGGu -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 9215 | 0.68 | 0.204458 |
Target: 5'- -gCGCGGCgCA-CGUucUGCgGCgCGCCCGg -3' miRNA: 3'- uaGCGCCG-GUaGCA--ACGgCG-GCGGGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 3744 | 0.68 | 0.20987 |
Target: 5'- gGUgGUgGGCaCGUCGgUGCCGCCGCUgGa -3' miRNA: 3'- -UAgCG-CCG-GUAGCaACGGCGGCGGgU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 41283 | 0.68 | 0.215406 |
Target: 5'- cUUGuCGGCC-UgGUgGCCGUCGCCCu -3' miRNA: 3'- uAGC-GCCGGuAgCAaCGGCGGCGGGu -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 19154 | 0.68 | 0.215406 |
Target: 5'- -cCGuCaGCCAgauggaugCGUUGUCGCUGCCCGu -3' miRNA: 3'- uaGC-GcCGGUa-------GCAACGGCGGCGGGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 38408 | 0.68 | 0.215406 |
Target: 5'- cUCGCGGCCAacaugcccgccaUCGagGCgGCCGgCUAc -3' miRNA: 3'- uAGCGCCGGU------------AGCaaCGgCGGCgGGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 91 | 0.67 | 0.232766 |
Target: 5'- --aGCGaGCCAuuuccagaUCGUucUGCgCGCCGUCCAa -3' miRNA: 3'- uagCGC-CGGU--------AGCA--ACG-GCGGCGGGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 18941 | 0.67 | 0.23881 |
Target: 5'- gGUCGCcuGGUgcaGUUGcUGCCGCCGCCg- -3' miRNA: 3'- -UAGCG--CCGg--UAGCaACGGCGGCGGgu -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 14297 | 0.67 | 0.244984 |
Target: 5'- -aUGCGGCCcacGUCGUUGCugaacuggCGCgCGCCUu -3' miRNA: 3'- uaGCGCCGG---UAGCAACG--------GCG-GCGGGu -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 16992 | 0.67 | 0.244984 |
Target: 5'- -cCGCGccGCCGUgGUUGCCaCUGCCUg -3' miRNA: 3'- uaGCGC--CGGUAgCAACGGcGGCGGGu -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 28837 | 0.67 | 0.25129 |
Target: 5'- gGUUGCGGCCGgacUUGCCgaaGCUGuCCCAg -3' miRNA: 3'- -UAGCGCCGGUagcAACGG---CGGC-GGGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 19054 | 0.67 | 0.25129 |
Target: 5'- uGUCGgccgaGGCCAUCGaccgcgUG-CGCCGCCUg -3' miRNA: 3'- -UAGCg----CCGGUAGCa-----ACgGCGGCGGGu -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 37706 | 0.67 | 0.25129 |
Target: 5'- -cCGUGGCCGaaaaCGagGCCGCCGUCg- -3' miRNA: 3'- uaGCGCCGGUa---GCaaCGGCGGCGGgu -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 12722 | 0.67 | 0.25129 |
Target: 5'- aGUCGCccGGcCCGUUGgugcugggUGCCGC-GCCCAg -3' miRNA: 3'- -UAGCG--CC-GGUAGCa-------ACGGCGgCGGGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 12625 | 0.67 | 0.257729 |
Target: 5'- -aCGCGcucGgCAUCGcUGCUGCCGUCCu -3' miRNA: 3'- uaGCGC---CgGUAGCaACGGCGGCGGGu -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 14383 | 0.67 | 0.257729 |
Target: 5'- -gCGUGGUCGUCGgcGUgGCCGaCCUg -3' miRNA: 3'- uaGCGCCGGUAGCaaCGgCGGC-GGGu -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 22233 | 0.66 | 0.264302 |
Target: 5'- -aCGCGGCCcUgGUUGUCGgCCGCg-- -3' miRNA: 3'- uaGCGCCGGuAgCAACGGC-GGCGggu -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 4046 | 0.66 | 0.277856 |
Target: 5'- -cCGCGGCgAgCGgcagGCCaGCgGCCCAg -3' miRNA: 3'- uaGCGCCGgUaGCaa--CGG-CGgCGGGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 10495 | 0.66 | 0.277856 |
Target: 5'- --aGCGGCCAgggCGUUGagcaaCGCgGCCg- -3' miRNA: 3'- uagCGCCGGUa--GCAACg----GCGgCGGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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