miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26706 5' -62.3 NC_005808.1 + 16827 1.06 0.000221
Target:  5'- cAUCGCGGCCAUCGUUGCCGCCGCCCAg -3'
miRNA:   3'- -UAGCGCCGGUAGCAACGGCGGCGGGU- -5'
26706 5' -62.3 NC_005808.1 + 10495 0.66 0.277856
Target:  5'- --aGCGGCCAgggCGUUGagcaaCGCgGCCg- -3'
miRNA:   3'- uagCGCCGGUa--GCAACg----GCGgCGGgu -5'
26706 5' -62.3 NC_005808.1 + 4651 0.66 0.289808
Target:  5'- -gCGuCGGCCAUCGcgucaaggucgaUGCCguagguaGCCGCCCc -3'
miRNA:   3'- uaGC-GCCGGUAGCa-----------ACGG-------CGGCGGGu -5'
26706 5' -62.3 NC_005808.1 + 1832 0.65 0.303639
Target:  5'- --aGUGGCCGaagaaagccaggaUGUUGCCGCCGUCUu -3'
miRNA:   3'- uagCGCCGGUa------------GCAACGGCGGCGGGu -5'
26706 5' -62.3 NC_005808.1 + 33763 0.72 0.103855
Target:  5'- -gCGCuGGCCcgCGUUGCgGCUGgCCCGa -3'
miRNA:   3'- uaGCG-CCGGuaGCAACGgCGGC-GGGU- -5'
26706 5' -62.3 NC_005808.1 + 33813 0.7 0.14449
Target:  5'- -gCGCGGCCGacccaUCGUgcGCCGCgugcUGCCCGa -3'
miRNA:   3'- uaGCGCCGGU-----AGCAa-CGGCG----GCGGGU- -5'
26706 5' -62.3 NC_005808.1 + 5155 0.69 0.179181
Target:  5'- --gGCGGCCGUCGcUGCUcaCGCCCu -3'
miRNA:   3'- uagCGCCGGUAGCaACGGcgGCGGGu -5'
26706 5' -62.3 NC_005808.1 + 8213 0.69 0.179181
Target:  5'- cAUgGCGGCCAguUCGUgcgcgGCCG-UGCCCu -3'
miRNA:   3'- -UAgCGCCGGU--AGCAa----CGGCgGCGGGu -5'
26706 5' -62.3 NC_005808.1 + 91 0.67 0.232766
Target:  5'- --aGCGaGCCAuuuccagaUCGUucUGCgCGCCGUCCAa -3'
miRNA:   3'- uagCGC-CGGU--------AGCA--ACG-GCGGCGGGU- -5'
26706 5' -62.3 NC_005808.1 + 14383 0.67 0.257729
Target:  5'- -gCGUGGUCGUCGgcGUgGCCGaCCUg -3'
miRNA:   3'- uaGCGCCGGUAGCaaCGgCGGC-GGGu -5'
26706 5' -62.3 NC_005808.1 + 16992 0.67 0.244984
Target:  5'- -cCGCGccGCCGUgGUUGCCaCUGCCUg -3'
miRNA:   3'- uaGCGC--CGGUAgCAACGGcGGCGGGu -5'
26706 5' -62.3 NC_005808.1 + 41283 0.68 0.215406
Target:  5'- cUUGuCGGCC-UgGUgGCCGUCGCCCu -3'
miRNA:   3'- uAGC-GCCGGuAgCAaCGGCGGCGGGu -5'
26706 5' -62.3 NC_005808.1 + 37026 0.73 0.080709
Target:  5'- gGUgGCGGCCAgCGUUGgCGCCGUCg- -3'
miRNA:   3'- -UAgCGCCGGUaGCAACgGCGGCGGgu -5'
26706 5' -62.3 NC_005808.1 + 19054 0.67 0.25129
Target:  5'- uGUCGgccgaGGCCAUCGaccgcgUG-CGCCGCCUg -3'
miRNA:   3'- -UAGCg----CCGGUAGCa-----ACgGCGGCGGGu -5'
26706 5' -62.3 NC_005808.1 + 19014 0.72 0.098224
Target:  5'- -aUGaCGGCCAUCGUcGCCccCCGCCCGc -3'
miRNA:   3'- uaGC-GCCGGUAGCAaCGGc-GGCGGGU- -5'
26706 5' -62.3 NC_005808.1 + 41555 0.69 0.188942
Target:  5'- uUCGCGGCgaCAU-GcUGCCGCCGgCCGu -3'
miRNA:   3'- uAGCGCCG--GUAgCaACGGCGGCgGGU- -5'
26706 5' -62.3 NC_005808.1 + 37706 0.67 0.25129
Target:  5'- -cCGUGGCCGaaaaCGagGCCGCCGUCg- -3'
miRNA:   3'- uaGCGCCGGUa---GCaaCGGCGGCGGgu -5'
26706 5' -62.3 NC_005808.1 + 4046 0.66 0.277856
Target:  5'- -cCGCGGCgAgCGgcagGCCaGCgGCCCAg -3'
miRNA:   3'- uaGCGCCGgUaGCaa--CGG-CGgCGGGU- -5'
26706 5' -62.3 NC_005808.1 + 33237 0.72 0.099326
Target:  5'- -aCGCGGCCGcaucaUCaagcaacugcaaaagGaUGCCGCCGCCCGc -3'
miRNA:   3'- uaGCGCCGGU-----AG---------------CaACGGCGGCGGGU- -5'
26706 5' -62.3 NC_005808.1 + 37677 0.69 0.16538
Target:  5'- cGUCGCGGgCAUCGcUGCCGaCGUuuCCAc -3'
miRNA:   3'- -UAGCGCCgGUAGCaACGGCgGCG--GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.