miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26718 5' -55.9 NC_005808.1 + 8839 1.13 0.000403
Target:  5'- uUGAUACCGUCCUCGCCGACGUAGCCCa -3'
miRNA:   3'- -ACUAUGGCAGGAGCGGCUGCAUCGGG- -5'
26718 5' -55.9 NC_005808.1 + 12858 0.68 0.51972
Target:  5'- cGAgGCCGagUUCuaCGGCGUGGCCg -3'
miRNA:   3'- aCUaUGGCagGAGcgGCUGCAUCGGg -5'
26718 5' -55.9 NC_005808.1 + 14364 0.68 0.529273
Target:  5'- cUGGcGCaGUCCgacccgcgcguggUCGUCGGCGUGGCCg -3'
miRNA:   3'- -ACUaUGgCAGG-------------AGCGGCUGCAUCGGg -5'
26718 5' -55.9 NC_005808.1 + 1859 0.66 0.655011
Target:  5'- ---cGCCGUCUugcagguucagcccgUgGCCGGCGcUGGCCg -3'
miRNA:   3'- acuaUGGCAGG---------------AgCGGCUGC-AUCGGg -5'
26718 5' -55.9 NC_005808.1 + 11621 0.72 0.323191
Target:  5'- aGAUcguccACCGUCa-CGCCGAaGUAGUCCg -3'
miRNA:   3'- aCUA-----UGGCAGgaGCGGCUgCAUCGGG- -5'
26718 5' -55.9 NC_005808.1 + 15590 0.71 0.331197
Target:  5'- cGGUACauaUCCgCGCCGcUGUAGCCCc -3'
miRNA:   3'- aCUAUGgc-AGGaGCGGCuGCAUCGGG- -5'
26718 5' -55.9 NC_005808.1 + 16577 0.71 0.364666
Target:  5'- uUGAUGCCa---UCGCCGAgGaAGCCCu -3'
miRNA:   3'- -ACUAUGGcaggAGCGGCUgCaUCGGG- -5'
26718 5' -55.9 NC_005808.1 + 4857 0.71 0.364666
Target:  5'- aGcgGCCagcuuccaaUCCUCGCCGGCG-AGCCa -3'
miRNA:   3'- aCuaUGGc--------AGGAGCGGCUGCaUCGGg -5'
26718 5' -55.9 NC_005808.1 + 8166 0.69 0.428626
Target:  5'- aUGAUGCgGcCCaggaaggCGCUGGCGUccuGCCCg -3'
miRNA:   3'- -ACUAUGgCaGGa------GCGGCUGCAu--CGGG- -5'
26718 5' -55.9 NC_005808.1 + 23202 0.68 0.488398
Target:  5'- gGAUGCUGgaaaCCUaCGCCGAaGUggacaaGGCCCu -3'
miRNA:   3'- aCUAUGGCa---GGA-GCGGCUgCA------UCGGG- -5'
26718 5' -55.9 NC_005808.1 + 13569 0.69 0.468017
Target:  5'- gGGUAUCGaCCUgGCCGaagcGCGgcGCCUg -3'
miRNA:   3'- aCUAUGGCaGGAgCGGC----UGCauCGGG- -5'
26718 5' -55.9 NC_005808.1 + 36213 0.7 0.382256
Target:  5'- cGGgccgGCCGgccugcgCCUgauUGCCGACGUGGgCCg -3'
miRNA:   3'- aCUa---UGGCa------GGA---GCGGCUGCAUCgGG- -5'
26718 5' -55.9 NC_005808.1 + 33267 0.77 0.142631
Target:  5'- gGAUGCCG-CCgcccgccgCGCCGACGUGcGCCg -3'
miRNA:   3'- aCUAUGGCaGGa-------GCGGCUGCAU-CGGg -5'
26718 5' -55.9 NC_005808.1 + 21895 0.69 0.468017
Target:  5'- gGGUGcCCGUgCCUCGUCGucc-AGCCCa -3'
miRNA:   3'- aCUAU-GGCA-GGAGCGGCugcaUCGGG- -5'
26718 5' -55.9 NC_005808.1 + 18650 0.77 0.150759
Target:  5'- -aAUGCCGaCCUCGCCGGgCGUGcGCCUg -3'
miRNA:   3'- acUAUGGCaGGAGCGGCU-GCAU-CGGG- -5'
26718 5' -55.9 NC_005808.1 + 8231 0.71 0.364666
Target:  5'- cGcgGCCGUgcCCUCGUCGGCGaAGUCg -3'
miRNA:   3'- aCuaUGGCA--GGAGCGGCUGCaUCGGg -5'
26718 5' -55.9 NC_005808.1 + 17903 0.69 0.478154
Target:  5'- cUGGcACCGauggacagCCUgggCGUgGACGUGGCCCg -3'
miRNA:   3'- -ACUaUGGCa-------GGA---GCGgCUGCAUCGGG- -5'
26718 5' -55.9 NC_005808.1 + 19487 0.68 0.51972
Target:  5'- cGuUACCGcUgUCGCCGugGgcGCCg -3'
miRNA:   3'- aCuAUGGCaGgAGCGGCugCauCGGg -5'
26718 5' -55.9 NC_005808.1 + 24193 0.75 0.208877
Target:  5'- ---cGCCacCUUCGCCGACGUGGCCg -3'
miRNA:   3'- acuaUGGcaGGAGCGGCUGCAUCGGg -5'
26718 5' -55.9 NC_005808.1 + 16335 0.71 0.356083
Target:  5'- cGA-GCCGaCCagGCCGGCGgguGCCCg -3'
miRNA:   3'- aCUaUGGCaGGagCGGCUGCau-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.