miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26728 3' -62.2 NC_005808.1 + 21427 0.78 0.043262
Target:  5'- gGcCGCGCAGCAGGCCGcgCUGuugaaCCAGGg -3'
miRNA:   3'- gCaGCGCGUCGUCCGGCa-GGC-----GGUCC- -5'
26728 3' -62.2 NC_005808.1 + 33930 0.68 0.251466
Target:  5'- gGUCGCGCGGCAcgcaauGCCGaCCGCgcgaugaAGGc -3'
miRNA:   3'- gCAGCGCGUCGUc-----CGGCaGGCGg------UCC- -5'
26728 3' -62.2 NC_005808.1 + 18941 0.68 0.257799
Target:  5'- gGUCGCcuGguGCAGuugcuGCCG-CCGCCGGc -3'
miRNA:   3'- gCAGCG--CguCGUC-----CGGCaGGCGGUCc -5'
26728 3' -62.2 NC_005808.1 + 30033 0.66 0.341733
Target:  5'- uCGcCGCGCAGCgcgAGGCCGgCaagaaauucaccgaCGCCgAGGu -3'
miRNA:   3'- -GCaGCGCGUCG---UCCGGCaG--------------GCGG-UCC- -5'
26728 3' -62.2 NC_005808.1 + 8979 0.72 0.124261
Target:  5'- -uUCGCaGCGGU-GGCCGUgCCGCCAGcGg -3'
miRNA:   3'- gcAGCG-CGUCGuCCGGCA-GGCGGUC-C- -5'
26728 3' -62.2 NC_005808.1 + 8409 0.7 0.185131
Target:  5'- uGUCGgGCAGCGaGCaGUUCGCgGGGg -3'
miRNA:   3'- gCAGCgCGUCGUcCGgCAGGCGgUCC- -5'
26728 3' -62.2 NC_005808.1 + 11607 0.69 0.191993
Target:  5'- gGUCGCGCgugAGCAGaucguccaccgucacGCCGaaguagUCCGCCAGc -3'
miRNA:   3'- gCAGCGCG---UCGUC---------------CGGC------AGGCGGUCc -5'
26728 3' -62.2 NC_005808.1 + 32004 0.69 0.200108
Target:  5'- --aUGCGguGCAGGCUG-CgCGCCuGGg -3'
miRNA:   3'- gcaGCGCguCGUCCGGCaG-GCGGuCC- -5'
26728 3' -62.2 NC_005808.1 + 14038 0.68 0.233235
Target:  5'- aCGUgCGCGCcGCGauGGCCGgcggCCGCaAGGu -3'
miRNA:   3'- -GCA-GCGCGuCGU--CCGGCa---GGCGgUCC- -5'
26728 3' -62.2 NC_005808.1 + 6466 0.68 0.245262
Target:  5'- cCGUCGCGCAGgAacuGCaCG-CCGCgCAGGc -3'
miRNA:   3'- -GCAGCGCGUCgUc--CG-GCaGGCG-GUCC- -5'
26728 3' -62.2 NC_005808.1 + 5240 0.68 0.239185
Target:  5'- -uUCGCGCAGUucGGCCGgCagGUCGGGg -3'
miRNA:   3'- gcAGCGCGUCGu-CCGGCaGg-CGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 4414 0.68 0.231474
Target:  5'- aG-CGUGCGGCagucguAGGUCGUacccggccgcaacaCCGCCAGGc -3'
miRNA:   3'- gCaGCGCGUCG------UCCGGCA--------------GGCGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 4381 0.76 0.062374
Target:  5'- --aUGCGCAGCcaGGcGCCGUCgCGCCGGGc -3'
miRNA:   3'- gcaGCGCGUCG--UC-CGGCAG-GCGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 12459 0.68 0.239185
Target:  5'- cCGaCGCGguGCAGGCCGgCgGCguGu -3'
miRNA:   3'- -GCaGCGCguCGUCCGGCaGgCGguCc -5'
26728 3' -62.2 NC_005808.1 + 11351 0.74 0.094334
Target:  5'- aCGUCGCccggcucGUAGCuGGGCCG-CgCGCCGGGg -3'
miRNA:   3'- -GCAGCG-------CGUCG-UCCGGCaG-GCGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 10889 0.69 0.20533
Target:  5'- cCG-CGCGCGGCGGGCUG---GUCAGGc -3'
miRNA:   3'- -GCaGCGCGUCGUCCGGCaggCGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 30460 0.68 0.245262
Target:  5'- gCGgaaGCGCAGCGcguGGCgCGUCgCGCCAa- -3'
miRNA:   3'- -GCag-CGCGUCGU---CCG-GCAG-GCGGUcc -5'
26728 3' -62.2 NC_005808.1 + 39099 0.68 0.25716
Target:  5'- -cUCGCGCugcguacugguacAGCGGGCCGUCgaacuCGCCcgcgaacaucGGGg -3'
miRNA:   3'- gcAGCGCG-------------UCGUCCGGCAG-----GCGG----------UCC- -5'
26728 3' -62.2 NC_005808.1 + 27349 0.72 0.117708
Target:  5'- -uUUGUGCGGCAGGCCGacccUCUGCCGu- -3'
miRNA:   3'- gcAGCGCGUCGUCCGGC----AGGCGGUcc -5'
26728 3' -62.2 NC_005808.1 + 2787 0.69 0.188535
Target:  5'- aCGUUGCGCAGguGcGCCcacuucgucgauucGUCgGgCCAGGu -3'
miRNA:   3'- -GCAGCGCGUCguC-CGG--------------CAGgC-GGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.