miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26732 5' -60.5 NC_005808.1 + 20360 0.66 0.378699
Target:  5'- -cGCcaucGCGGCCGa-CAACCaGgGCCGCg -3'
miRNA:   3'- caCGu---CGUCGGCcaGUUGG-CgCGGCG- -5'
26732 5' -60.5 NC_005808.1 + 33377 0.66 0.378699
Target:  5'- -cGCcgGGCGcGCCGcagaacGUgcGCCGCGCCGCc -3'
miRNA:   3'- caCG--UCGU-CGGC------CAguUGGCGCGGCG- -5'
26732 5' -60.5 NC_005808.1 + 29117 0.66 0.378699
Target:  5'- -cGCGGuCGGCaucgcccaGGUCAugcccgacACCGCGCC-Cg -3'
miRNA:   3'- caCGUC-GUCGg-------CCAGU--------UGGCGCGGcG- -5'
26732 5' -60.5 NC_005808.1 + 15393 0.66 0.378699
Target:  5'- cGUGCgggccGGCGaagauGCCGGaCGACCGaUGCaCGCg -3'
miRNA:   3'- -CACG-----UCGU-----CGGCCaGUUGGC-GCG-GCG- -5'
26732 5' -60.5 NC_005808.1 + 18710 0.66 0.377823
Target:  5'- -aGCAGCAGCgcauCGGUaCGGCgGCacgggauGCCGUc -3'
miRNA:   3'- caCGUCGUCG----GCCA-GUUGgCG-------CGGCG- -5'
26732 5' -60.5 NC_005808.1 + 34761 0.66 0.377823
Target:  5'- -cGCGuGC-GCCuGGUCAucgugcaGCCGCGCCu- -3'
miRNA:   3'- caCGU-CGuCGG-CCAGU-------UGGCGCGGcg -5'
26732 5' -60.5 NC_005808.1 + 8592 0.66 0.377823
Target:  5'- cGUGCGGCcuggugcuggauaAGCUGGuugcgcuucUCGGCCGCuGCgGUg -3'
miRNA:   3'- -CACGUCG-------------UCGGCC---------AGUUGGCG-CGgCG- -5'
26732 5' -60.5 NC_005808.1 + 785 0.66 0.376949
Target:  5'- -cGCAGCGuauuucagguuuCCGG-CGA-CGCGCCGCg -3'
miRNA:   3'- caCGUCGUc-----------GGCCaGUUgGCGCGGCG- -5'
26732 5' -60.5 NC_005808.1 + 9273 0.66 0.370004
Target:  5'- -aGCGGuCGGcCCGGUacACCG-GCUGCg -3'
miRNA:   3'- caCGUC-GUC-GGCCAguUGGCgCGGCG- -5'
26732 5' -60.5 NC_005808.1 + 25799 0.66 0.370004
Target:  5'- -cGCGGCGcGCuCGGuaUCGuugaucugcACCGgGCCGCc -3'
miRNA:   3'- caCGUCGU-CG-GCC--AGU---------UGGCgCGGCG- -5'
26732 5' -60.5 NC_005808.1 + 32525 0.66 0.368282
Target:  5'- cGUGCAgGCuggugauGCCGGcCAggaugcuGCCGCcggcgauGCCGCu -3'
miRNA:   3'- -CACGU-CGu------CGGCCaGU-------UGGCG-------CGGCG- -5'
26732 5' -60.5 NC_005808.1 + 9993 0.66 0.361448
Target:  5'- -cGUGGCGG--GGUCGAaaGUGCCGCg -3'
miRNA:   3'- caCGUCGUCggCCAGUUggCGCGGCG- -5'
26732 5' -60.5 NC_005808.1 + 32736 0.66 0.361448
Target:  5'- -aGCAGCGcGCCGGUgcCAcgcucAUCGaCGCCGa -3'
miRNA:   3'- caCGUCGU-CGGCCA--GU-----UGGC-GCGGCg -5'
26732 5' -60.5 NC_005808.1 + 5541 0.66 0.361448
Target:  5'- -gGCAGCuuCUGGUCAAUcaCGCGCaugGCu -3'
miRNA:   3'- caCGUCGucGGCCAGUUG--GCGCGg--CG- -5'
26732 5' -60.5 NC_005808.1 + 1947 0.66 0.361448
Target:  5'- cUGCGGguuCUGGUCGAgCGCGCgGCc -3'
miRNA:   3'- cACGUCgucGGCCAGUUgGCGCGgCG- -5'
26732 5' -60.5 NC_005808.1 + 30750 0.66 0.361448
Target:  5'- -cGCGGgGuucGCCcaGGcCAACCGCGgCGCg -3'
miRNA:   3'- caCGUCgU---CGG--CCaGUUGGCGCgGCG- -5'
26732 5' -60.5 NC_005808.1 + 1142 0.66 0.361448
Target:  5'- -aGCAGCGGCCGuuugcgcucgccGUCGAUgGUgaaggacaGCCGUa -3'
miRNA:   3'- caCGUCGUCGGC------------CAGUUGgCG--------CGGCG- -5'
26732 5' -60.5 NC_005808.1 + 23643 0.66 0.361448
Target:  5'- -cGCGGUAGCCGG-CGGCgG-GCaGCa -3'
miRNA:   3'- caCGUCGUCGGCCaGUUGgCgCGgCG- -5'
26732 5' -60.5 NC_005808.1 + 25997 0.66 0.360599
Target:  5'- -gGCGGC-GCCaacaccaucgcguGGUCGGCCucguccggcGCGUCGCg -3'
miRNA:   3'- caCGUCGuCGG-------------CCAGUUGG---------CGCGGCG- -5'
26732 5' -60.5 NC_005808.1 + 39424 0.66 0.353029
Target:  5'- -cGCAGCGgacGCCGGgcuuGCCaUGCUGCg -3'
miRNA:   3'- caCGUCGU---CGGCCagu-UGGcGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.