miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26739 5' -61.8 NC_005808.1 + 7611 0.66 0.303699
Target:  5'- cAGCAcGUGGucGCGCagcgCCGGACACguggCCUUg -3'
miRNA:   3'- -UCGU-CGCC--CGCG----GGCCUGUGaa--GGAG- -5'
26739 5' -61.8 NC_005808.1 + 41312 0.66 0.296347
Target:  5'- cGCGGCGGuGUGggCGGGCAUcaCCUCg -3'
miRNA:   3'- uCGUCGCC-CGCggGCCUGUGaaGGAG- -5'
26739 5' -61.8 NC_005808.1 + 30083 0.66 0.296347
Target:  5'- ---uGUGcGGCGCCCGGGCGCcacggcCCUUg -3'
miRNA:   3'- ucguCGC-CCGCGGGCCUGUGaa----GGAG- -5'
26739 5' -61.8 NC_005808.1 + 7544 0.66 0.288419
Target:  5'- cGGCGGCGugcucgaucugcGGCGCCaccggcuUGGACACgUCCa- -3'
miRNA:   3'- -UCGUCGC------------CCGCGG-------GCCUGUGaAGGag -5'
26739 5' -61.8 NC_005808.1 + 12514 0.66 0.279962
Target:  5'- gGGCcGU-GGCGCCCGGGCGCcgcacaaaggauauUUCCg- -3'
miRNA:   3'- -UCGuCGcCCGCGGGCCUGUG--------------AAGGag -5'
26739 5' -61.8 NC_005808.1 + 38726 0.67 0.273066
Target:  5'- cGGCAGCGcggccuacagcgacGGCGCCUGGuACAaCUUCg-- -3'
miRNA:   3'- -UCGUCGC--------------CCGCGGGCC-UGU-GAAGgag -5'
26739 5' -61.8 NC_005808.1 + 22047 0.67 0.26832
Target:  5'- gAGCAGCaagcggGGGCGCCgcaucgUGuGGCGCUUUCUg -3'
miRNA:   3'- -UCGUCG------CCCGCGG------GC-CUGUGAAGGAg -5'
26739 5' -61.8 NC_005808.1 + 13456 0.67 0.255128
Target:  5'- uGGCGGCcucGGGCGCggugUCGGGCAUgaCCUg -3'
miRNA:   3'- -UCGUCG---CCCGCG----GGCCUGUGaaGGAg -5'
26739 5' -61.8 NC_005808.1 + 33179 0.67 0.255128
Target:  5'- uGCggaAGUGGGCGCCCucGGCACggCCa- -3'
miRNA:   3'- uCG---UCGCCCGCGGGc-CUGUGaaGGag -5'
26739 5' -61.8 NC_005808.1 + 28592 0.67 0.248734
Target:  5'- cGGCAGCGuGGUG-UCGGuCAgUUCCUUg -3'
miRNA:   3'- -UCGUCGC-CCGCgGGCCuGUgAAGGAG- -5'
26739 5' -61.8 NC_005808.1 + 16345 0.68 0.230344
Target:  5'- aGGcCGGCGGGUGCCCGuGC-CUUCg-- -3'
miRNA:   3'- -UC-GUCGCCCGCGGGCcUGuGAAGgag -5'
26739 5' -61.8 NC_005808.1 + 42413 0.68 0.230344
Target:  5'- cGGCAGCGugacGGUGCCCagcgacaccgGGGCGCaUCCg- -3'
miRNA:   3'- -UCGUCGC----CCGCGGG----------CCUGUGaAGGag -5'
26739 5' -61.8 NC_005808.1 + 13743 0.68 0.230344
Target:  5'- cGUGGCGcGGCGCUgGGACAgCUUCg-- -3'
miRNA:   3'- uCGUCGC-CCGCGGgCCUGU-GAAGgag -5'
26739 5' -61.8 NC_005808.1 + 8172 0.68 0.224474
Target:  5'- uGC-GCGuGCGCCCGGAUGCUgCCg- -3'
miRNA:   3'- uCGuCGCcCGCGGGCCUGUGAaGGag -5'
26739 5' -61.8 NC_005808.1 + 15145 0.68 0.218732
Target:  5'- uGGCGGCGGauGCGCCCaGGGCgacgGCUgauguugcUCCUg -3'
miRNA:   3'- -UCGUCGCC--CGCGGG-CCUG----UGA--------AGGAg -5'
26739 5' -61.8 NC_005808.1 + 15861 0.68 0.218732
Target:  5'- cGCAGCGGGCGCgcuggCGGugGCccggCUUUg -3'
miRNA:   3'- uCGUCGCCCGCGg----GCCugUGaa--GGAG- -5'
26739 5' -61.8 NC_005808.1 + 14759 0.69 0.202253
Target:  5'- gAGCAGCGGcGCGgCCGG-CGCcaCCg- -3'
miRNA:   3'- -UCGUCGCC-CGCgGGCCuGUGaaGGag -5'
26739 5' -61.8 NC_005808.1 + 32590 0.69 0.202253
Target:  5'- gGGCGGgggcCGGGCGCgCGG-CACUUUCg- -3'
miRNA:   3'- -UCGUC----GCCCGCGgGCCuGUGAAGGag -5'
26739 5' -61.8 NC_005808.1 + 7381 0.69 0.202253
Target:  5'- cAGCGGCGGGCaCCgCGGcgAC-CUUCCa- -3'
miRNA:   3'- -UCGUCGCCCGcGG-GCC--UGuGAAGGag -5'
26739 5' -61.8 NC_005808.1 + 34322 0.69 0.200666
Target:  5'- cGGCAGCGuGGCccuggaagccgaauGCCCGGAUgaUUCCa- -3'
miRNA:   3'- -UCGUCGC-CCG--------------CGGGCCUGugAAGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.