miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26743 3' -51.8 NC_005808.1 + 11711 0.66 0.856268
Target:  5'- cCGC-UUGGCGAggucuuUGGACUGCgcaccccauugugCGAACu -3'
miRNA:   3'- -GCGuAACCGCU------GCUUGACGa------------GCUUGc -5'
26743 3' -51.8 NC_005808.1 + 31919 0.66 0.851032
Target:  5'- uGCcugcGGCGuuuCGAgcGCUGCUCGAcACGc -3'
miRNA:   3'- gCGuaa-CCGCu--GCU--UGACGAGCU-UGC- -5'
26743 3' -51.8 NC_005808.1 + 22483 0.66 0.851032
Target:  5'- gGCAUUcGaCGACGGugUGCU-GGGCGc -3'
miRNA:   3'- gCGUAAcC-GCUGCUugACGAgCUUGC- -5'
26743 3' -51.8 NC_005808.1 + 29941 0.66 0.851032
Target:  5'- gCGCAUgaugGGCGACGAcccgAC-GCcaaaGGACGg -3'
miRNA:   3'- -GCGUAa---CCGCUGCU----UGaCGag--CUUGC- -5'
26743 3' -51.8 NC_005808.1 + 7617 0.66 0.850151
Target:  5'- uGCcgUGGUGAUGGucaggggGCgcgGCUCGAcccACGc -3'
miRNA:   3'- gCGuaACCGCUGCU-------UGa--CGAGCU---UGC- -5'
26743 3' -51.8 NC_005808.1 + 10889 0.66 0.842109
Target:  5'- cCGCGc--GCGGCGGGCUGgUCaGGCGg -3'
miRNA:   3'- -GCGUaacCGCUGCUUGACgAGcUUGC- -5'
26743 3' -51.8 NC_005808.1 + 39514 0.66 0.842109
Target:  5'- cCGCGUgucgaagGGC-AUGggUgcgGCUCGGGCGc -3'
miRNA:   3'- -GCGUAa------CCGcUGCuuGa--CGAGCUUGC- -5'
26743 3' -51.8 NC_005808.1 + 29258 0.66 0.842109
Target:  5'- gCGCGacUUcGGCGGCGAcCUGC-CGAAa- -3'
miRNA:   3'- -GCGU--AA-CCGCUGCUuGACGaGCUUgc -5'
26743 3' -51.8 NC_005808.1 + 35978 0.66 0.841203
Target:  5'- gCGCGaagcUGGCGGCGGACuacgccaUGCUCu-ACGu -3'
miRNA:   3'- -GCGUa---ACCGCUGCUUG-------ACGAGcuUGC- -5'
26743 3' -51.8 NC_005808.1 + 9313 0.66 0.832949
Target:  5'- gGCGaccUGGCGGCGcACgucgGCgcggCGGGCGg -3'
miRNA:   3'- gCGUa--ACCGCUGCuUGa---CGa---GCUUGC- -5'
26743 3' -51.8 NC_005808.1 + 7672 0.66 0.83202
Target:  5'- aCGCGccguucuUUGGCGGCGAuCUGCggccgguagcccUCGAAg- -3'
miRNA:   3'- -GCGU-------AACCGCUGCUuGACG------------AGCUUgc -5'
26743 3' -51.8 NC_005808.1 + 21296 0.66 0.813957
Target:  5'- aGCGgucGGCGuCGAACUugUCGAGCa -3'
miRNA:   3'- gCGUaa-CCGCuGCUUGAcgAGCUUGc -5'
26743 3' -51.8 NC_005808.1 + 7539 0.66 0.813957
Target:  5'- gCGCuc-GGCGGCG---UGCUCGAucuGCGg -3'
miRNA:   3'- -GCGuaaCCGCUGCuugACGAGCU---UGC- -5'
26743 3' -51.8 NC_005808.1 + 19510 0.67 0.804148
Target:  5'- cCGcCGUUGGCGucgggGCGAGCaUGUacaugUCGAACa -3'
miRNA:   3'- -GC-GUAACCGC-----UGCUUG-ACG-----AGCUUGc -5'
26743 3' -51.8 NC_005808.1 + 24821 0.67 0.804148
Target:  5'- aGCAUcUGGCuGCGcAAUgGCUCGGGCa -3'
miRNA:   3'- gCGUA-ACCGcUGC-UUGaCGAGCUUGc -5'
26743 3' -51.8 NC_005808.1 + 30424 0.67 0.804148
Target:  5'- gGCA-UGGCGAUGAGCg---CGGGCa -3'
miRNA:   3'- gCGUaACCGCUGCUUGacgaGCUUGc -5'
26743 3' -51.8 NC_005808.1 + 39332 0.67 0.788055
Target:  5'- gGCGUUGcGCGG-GAAauguuccugaagugcCUGCUCGGGCa -3'
miRNA:   3'- gCGUAAC-CGCUgCUU---------------GACGAGCUUGc -5'
26743 3' -51.8 NC_005808.1 + 7751 0.67 0.78396
Target:  5'- uGCuGUUGGCGACGAAggaauccagGCUCGcGCc -3'
miRNA:   3'- gCG-UAACCGCUGCUUga-------CGAGCuUGc -5'
26743 3' -51.8 NC_005808.1 + 34529 0.67 0.773606
Target:  5'- gCGCGccuugGGCGGUGAACUGauggUCGAGCa -3'
miRNA:   3'- -GCGUaa---CCGCUGCUUGACg---AGCUUGc -5'
26743 3' -51.8 NC_005808.1 + 5352 0.67 0.773606
Target:  5'- uGuCGUUGGCGACagccAACaUGCUCGAcagguGCGu -3'
miRNA:   3'- gC-GUAACCGCUGc---UUG-ACGAGCU-----UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.