miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26752 3' -61.1 NC_005808.1 + 10498 0.65 0.412072
Target:  5'- gGCCaGGgcguugagcaacGCGGCCGUGUUGGCGggGc -3'
miRNA:   3'- -CGG-CCac----------CGCCGGUGCAGCCGCuuCc -5'
26752 3' -61.1 NC_005808.1 + 14351 0.66 0.406685
Target:  5'- uGCUGGUucgcGGUGuCCugGaaGGCGggGGc -3'
miRNA:   3'- -CGGCCA----CCGCcGGugCagCCGCuuCC- -5'
26752 3' -61.1 NC_005808.1 + 591 0.66 0.397804
Target:  5'- uGCuCGG-GGUagugcuucGCCAUGUCGGCGAugauGGc -3'
miRNA:   3'- -CG-GCCaCCGc-------CGGUGCAGCCGCUu---CC- -5'
26752 3' -61.1 NC_005808.1 + 28561 0.66 0.397804
Target:  5'- cGCCGGccaucGCGGCgcgCACGUCGGCcaccGGc -3'
miRNA:   3'- -CGGCCac---CGCCG---GUGCAGCCGcuu-CC- -5'
26752 3' -61.1 NC_005808.1 + 9567 0.66 0.397804
Target:  5'- cGCCGGUGGCGaGCauccggucgaaCACGUUGcGCa---- -3'
miRNA:   3'- -CGGCCACCGC-CG-----------GUGCAGC-CGcuucc -5'
26752 3' -61.1 NC_005808.1 + 26404 0.66 0.397804
Target:  5'- uUCGGgcgaaUGGCGcGUgGCGUCGGUGAAc- -3'
miRNA:   3'- cGGCC-----ACCGC-CGgUGCAGCCGCUUcc -5'
26752 3' -61.1 NC_005808.1 + 17249 0.66 0.395164
Target:  5'- gGCCGGcuaugcgaacUGGcCGGCCugGacaauccCGGCGAcgagcgccgguggcAGGg -3'
miRNA:   3'- -CGGCC----------ACC-GCCGGugCa------GCCGCU--------------UCC- -5'
26752 3' -61.1 NC_005808.1 + 29364 0.66 0.389048
Target:  5'- cGCCGGUGGCcuuGCCccagcccucggAC-UCGGCGcgguAGGc -3'
miRNA:   3'- -CGGCCACCGc--CGG-----------UGcAGCCGCu---UCC- -5'
26752 3' -61.1 NC_005808.1 + 10928 0.66 0.38818
Target:  5'- cGCCGGUuugcagggccucgGGCaGUUGCG-CGGCGAcagccGGGg -3'
miRNA:   3'- -CGGCCA-------------CCGcCGGUGCaGCCGCU-----UCC- -5'
26752 3' -61.1 NC_005808.1 + 7731 0.66 0.38042
Target:  5'- cGCaCGcucGGCGGCCGgcuugcUGUUGGCGAcgaAGGa -3'
miRNA:   3'- -CG-GCca-CCGCCGGU------GCAGCCGCU---UCC- -5'
26752 3' -61.1 NC_005808.1 + 19040 0.66 0.363552
Target:  5'- cCUGGUaGCGGCCGCcggCGGCGucGa -3'
miRNA:   3'- cGGCCAcCGCCGGUGca-GCCGCuuCc -5'
26752 3' -61.1 NC_005808.1 + 4801 0.67 0.355314
Target:  5'- cGCCGGcUGGC-GCUGCGggauugcuggcCGGCGAcAGGu -3'
miRNA:   3'- -CGGCC-ACCGcCGGUGCa----------GCCGCU-UCC- -5'
26752 3' -61.1 NC_005808.1 + 1348 0.67 0.355314
Target:  5'- aGCCguGGUcGGCGGCCuuGCGcaucCGGCGAc-- -3'
miRNA:   3'- -CGG--CCA-CCGCCGG--UGCa---GCCGCUucc -5'
26752 3' -61.1 NC_005808.1 + 10216 0.67 0.347209
Target:  5'- uGCUGGcuuccugcugGGCGGCCGgGgccUCGGCGgcGa -3'
miRNA:   3'- -CGGCCa---------CCGCCGGUgC---AGCCGCuuCc -5'
26752 3' -61.1 NC_005808.1 + 26269 0.67 0.339236
Target:  5'- cGCCGGccUGGuCGGCuCGCGcaucgCGcGCGAuGGa -3'
miRNA:   3'- -CGGCC--ACC-GCCG-GUGCa----GC-CGCUuCC- -5'
26752 3' -61.1 NC_005808.1 + 35729 0.67 0.331398
Target:  5'- -aUGGUGGaCGuGCCgACGU-GGUGggGGg -3'
miRNA:   3'- cgGCCACC-GC-CGG-UGCAgCCGCuuCC- -5'
26752 3' -61.1 NC_005808.1 + 27500 0.67 0.331398
Target:  5'- uGCCGGcGGCcucGGCCGCcagcuucUCGGCGcggucGGGg -3'
miRNA:   3'- -CGGCCaCCG---CCGGUGc------AGCCGCu----UCC- -5'
26752 3' -61.1 NC_005808.1 + 6345 0.67 0.331398
Target:  5'- cGCCcuggugcgucugGGUGGCgaaccGGcCCACGUCGGCaaucAGGc -3'
miRNA:   3'- -CGG------------CCACCG-----CC-GGUGCAGCCGcu--UCC- -5'
26752 3' -61.1 NC_005808.1 + 29327 0.67 0.331398
Target:  5'- aGgCGGUGGCGGUCGC--CGGCcAAGu -3'
miRNA:   3'- -CgGCCACCGCCGGUGcaGCCGcUUCc -5'
26752 3' -61.1 NC_005808.1 + 24522 0.67 0.330621
Target:  5'- cGCCGGcuucGGCGGCCcagcacgcaccccGCGcCGGU-AAGGc -3'
miRNA:   3'- -CGGCCa---CCGCCGG-------------UGCaGCCGcUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.