miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26752 3' -61.1 NC_005808.1 + 19499 0.69 0.266877
Target:  5'- cGCCGuG-GGC-GCCGcCGUUGGCGucGGg -3'
miRNA:   3'- -CGGC-CaCCGcCGGU-GCAGCCGCuuCC- -5'
26752 3' -61.1 NC_005808.1 + 591 0.66 0.397804
Target:  5'- uGCuCGG-GGUagugcuucGCCAUGUCGGCGAugauGGc -3'
miRNA:   3'- -CG-GCCaCCGc-------CGGUGCAGCCGCUu---CC- -5'
26752 3' -61.1 NC_005808.1 + 35729 0.67 0.331398
Target:  5'- -aUGGUGGaCGuGCCgACGU-GGUGggGGg -3'
miRNA:   3'- cgGCCACC-GC-CGG-UGCAgCCGCuuCC- -5'
26752 3' -61.1 NC_005808.1 + 13562 0.69 0.266877
Target:  5'- cGCCGGUGGguaucgaccUGGCCgaaGCG-CGGCGccuGGu -3'
miRNA:   3'- -CGGCCACC---------GCCGG---UGCaGCCGCuu-CC- -5'
26752 3' -61.1 NC_005808.1 + 14908 0.69 0.247747
Target:  5'- uGCCGGcGcGCGGCC-UGUauuccaagaccaCGGUGGAGGu -3'
miRNA:   3'- -CGGCCaC-CGCCGGuGCA------------GCCGCUUCC- -5'
26752 3' -61.1 NC_005808.1 + 13919 0.69 0.247747
Target:  5'- -aCGacGUGGCGcGCCGCGcUGGCGAGGc -3'
miRNA:   3'- cgGC--CACCGC-CGGUGCaGCCGCUUCc -5'
26752 3' -61.1 NC_005808.1 + 41119 0.71 0.17765
Target:  5'- aGCCGGUGGCGGaaGaagaaCGGCGucGAGGa -3'
miRNA:   3'- -CGGCCACCGCCggUgca--GCCGC--UUCC- -5'
26752 3' -61.1 NC_005808.1 + 21591 0.76 0.082081
Target:  5'- uUCGGUGGCGGUCAucugcggauuggugcCGUUGGCGAgcaugAGGa -3'
miRNA:   3'- cGGCCACCGCCGGU---------------GCAGCCGCU-----UCC- -5'
26752 3' -61.1 NC_005808.1 + 9567 0.66 0.397804
Target:  5'- cGCCGGUGGCGaGCauccggucgaaCACGUUGcGCa---- -3'
miRNA:   3'- -CGGCCACCGC-CG-----------GUGCAGC-CGcuucc -5'
26752 3' -61.1 NC_005808.1 + 29364 0.66 0.389048
Target:  5'- cGCCGGUGGCcuuGCCccagcccucggAC-UCGGCGcgguAGGc -3'
miRNA:   3'- -CGGCCACCGc--CGG-----------UGcAGCCGCu---UCC- -5'
26752 3' -61.1 NC_005808.1 + 15376 0.69 0.266877
Target:  5'- cUCGGUGaGCGcGuCCGCGUgcgggcCGGCGAAGa -3'
miRNA:   3'- cGGCCAC-CGC-C-GGUGCA------GCCGCUUCc -5'
26752 3' -61.1 NC_005808.1 + 13448 0.69 0.266877
Target:  5'- cGCCaGcuUGGCGGCCuCGggcgCGGUGucGGg -3'
miRNA:   3'- -CGGcC--ACCGCCGGuGCa---GCCGCuuCC- -5'
26752 3' -61.1 NC_005808.1 + 3833 0.69 0.266877
Target:  5'- uGCC-GUGGUGaGUCAUGaccUCGGCGAAGu -3'
miRNA:   3'- -CGGcCACCGC-CGGUGC---AGCCGCUUCc -5'
26752 3' -61.1 NC_005808.1 + 41601 0.69 0.253994
Target:  5'- gGCCaGUGGCgcgGGCaGCGggcugaCGGUGAAGGg -3'
miRNA:   3'- -CGGcCACCG---CCGgUGCa-----GCCGCUUCC- -5'
26752 3' -61.1 NC_005808.1 + 4274 0.72 0.147683
Target:  5'- cGCCGGcaUGGUgauGGCCGUGUCGGCGGu-- -3'
miRNA:   3'- -CGGCC--ACCG---CCGGUGCAGCCGCUucc -5'
26752 3' -61.1 NC_005808.1 + 26269 0.67 0.339236
Target:  5'- cGCCGGccUGGuCGGCuCGCGcaucgCGcGCGAuGGa -3'
miRNA:   3'- -CGGCC--ACC-GCCG-GUGCa----GC-CGCUuCC- -5'
26752 3' -61.1 NC_005808.1 + 1348 0.67 0.355314
Target:  5'- aGCCguGGUcGGCGGCCuuGCGcaucCGGCGAc-- -3'
miRNA:   3'- -CGG--CCA-CCGCCGG--UGCa---GCCGCUucc -5'
26752 3' -61.1 NC_005808.1 + 4801 0.67 0.355314
Target:  5'- cGCCGGcUGGC-GCUGCGggauugcuggcCGGCGAcAGGu -3'
miRNA:   3'- -CGGCC-ACCGcCGGUGCa----------GCCGCU-UCC- -5'
26752 3' -61.1 NC_005808.1 + 19040 0.66 0.363552
Target:  5'- cCUGGUaGCGGCCGCcggCGGCGucGa -3'
miRNA:   3'- cGGCCAcCGCCGGUGca-GCCGCuuCc -5'
26752 3' -61.1 NC_005808.1 + 10928 0.66 0.38818
Target:  5'- cGCCGGUuugcagggccucgGGCaGUUGCG-CGGCGAcagccGGGg -3'
miRNA:   3'- -CGGCCA-------------CCGcCGGUGCaGCCGCU-----UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.