miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26758 5' -59.5 NC_005808.1 + 42450 0.76 0.079682
Target:  5'- cCGCCugcgGGGAAGccugGCGCCACGCCguaGCu -3'
miRNA:   3'- uGCGGu---UCCUUCa---CGCGGUGCGGg--CG- -5'
26758 5' -59.5 NC_005808.1 + 42375 0.78 0.059826
Target:  5'- cGCGCCAAugccGAGGUGCGCCAguucgccguguCGCCCGg -3'
miRNA:   3'- -UGCGGUUc---CUUCACGCGGU-----------GCGGGCg -5'
26758 5' -59.5 NC_005808.1 + 42121 0.67 0.353312
Target:  5'- cUGCCGAGGcauccgaccGCGacaGCGCCCGCa -3'
miRNA:   3'- uGCGGUUCCuuca-----CGCgg-UGCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 40548 0.68 0.322501
Target:  5'- gACcCCGAGGAAuuGcGCGCCGuguucuauCGCCUGCg -3'
miRNA:   3'- -UGcGGUUCCUU--CaCGCGGU--------GCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 39832 0.68 0.292285
Target:  5'- aACGUCGAGGugucggcAGUGguCGgCACGCCCGa -3'
miRNA:   3'- -UGCGGUUCCu------UCAC--GCgGUGCGGGCg -5'
26758 5' -59.5 NC_005808.1 + 39023 0.66 0.41718
Target:  5'- -gGCCGcGGAucGGUGUacGCC-CaGCCCGCu -3'
miRNA:   3'- ugCGGUuCCU--UCACG--CGGuG-CGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 38751 0.67 0.358363
Target:  5'- gGCGgCGAGGugcgcaAAGUGCGCUggauuggucgcaacgGCGCCCcCg -3'
miRNA:   3'- -UGCgGUUCC------UUCACGCGG---------------UGCGGGcG- -5'
26758 5' -59.5 NC_005808.1 + 38203 0.67 0.380829
Target:  5'- cACGCuCAAGGcccGGcgcgacgGCGCCugGCUgCGCa -3'
miRNA:   3'- -UGCG-GUUCCu--UCa------CGCGGugCGG-GCG- -5'
26758 5' -59.5 NC_005808.1 + 37438 0.74 0.128563
Target:  5'- uCGCCAAGGgcGUGagcaGCgACGgCCGCc -3'
miRNA:   3'- uGCGGUUCCuuCACg---CGgUGCgGGCG- -5'
26758 5' -59.5 NC_005808.1 + 36965 0.75 0.102817
Target:  5'- -aGCCAccAGcAAGcUGCGCCGCGCCaCGCg -3'
miRNA:   3'- ugCGGU--UCcUUC-ACGCGGUGCGG-GCG- -5'
26758 5' -59.5 NC_005808.1 + 36266 0.67 0.372078
Target:  5'- gGCGCUuuggcuGGGgcGgaacGCGCCGCGuCuuGCa -3'
miRNA:   3'- -UGCGGu-----UCCuuCa---CGCGGUGC-GggCG- -5'
26758 5' -59.5 NC_005808.1 + 35898 0.68 0.307109
Target:  5'- cGCGCCcAGGAcaaGGUGUGCC-UGCacgaUGCg -3'
miRNA:   3'- -UGCGGuUCCU---UCACGCGGuGCGg---GCG- -5'
26758 5' -59.5 NC_005808.1 + 35848 0.71 0.203382
Target:  5'- uCGCCAAGGAaaAGUgggGCGCCaaggccgACGCCgUGCu -3'
miRNA:   3'- uGCGGUUCCU--UCA---CGCGG-------UGCGG-GCG- -5'
26758 5' -59.5 NC_005808.1 + 35424 0.66 0.426594
Target:  5'- uGCGUCAGGGcgucAGcGCGUCGgGCCUGg -3'
miRNA:   3'- -UGCGGUUCCu---UCaCGCGGUgCGGGCg -5'
26758 5' -59.5 NC_005808.1 + 35370 0.69 0.271107
Target:  5'- uCGCCGAGGguGaGCGCgGCGCagaUGCu -3'
miRNA:   3'- uGCGGUUCCuuCaCGCGgUGCGg--GCG- -5'
26758 5' -59.5 NC_005808.1 + 35249 0.69 0.278026
Target:  5'- gACGCCGAGGucGaG-GCCGCGCUCa- -3'
miRNA:   3'- -UGCGGUUCCuuCaCgCGGUGCGGGcg -5'
26758 5' -59.5 NC_005808.1 + 35208 0.67 0.363464
Target:  5'- -aGCUGGuGGAAG-GuCGCCGCgguGCCCGCc -3'
miRNA:   3'- ugCGGUU-CCUUCaC-GCGGUG---CGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 35165 0.83 0.026488
Target:  5'- cGCGUCGAGGAAGUGU-CCggGCGCCCGCu -3'
miRNA:   3'- -UGCGGUUCCUUCACGcGG--UGCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 34952 0.66 0.398739
Target:  5'- uACGgCAAGGAGccggcGUGggucgaGCCGCGCCCc- -3'
miRNA:   3'- -UGCgGUUCCUU-----CACg-----CGGUGCGGGcg -5'
26758 5' -59.5 NC_005808.1 + 34765 0.68 0.314734
Target:  5'- uGCGCCu-GGucaucGUGCaGCCGCGCCuCGa -3'
miRNA:   3'- -UGCGGuuCCuu---CACG-CGGUGCGG-GCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.