miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26763 3' -50.9 NC_005808.1 + 15295 0.66 0.879815
Target:  5'- gUGGGCGUCGugGgaaGCCuuCGCcaag-GCg -3'
miRNA:   3'- -ACCCGUAGCugCa--UGG--GCGauuuaUG- -5'
26763 3' -50.9 NC_005808.1 + 18269 0.66 0.879815
Target:  5'- cGGGCAUCGcucugcCGccugACCCGCggc-UGCu -3'
miRNA:   3'- aCCCGUAGCu-----GCa---UGGGCGauuuAUG- -5'
26763 3' -50.9 NC_005808.1 + 38856 0.66 0.87901
Target:  5'- gGcGGCAcCGACGUGCCCaccaccgGCgugAAcgGCa -3'
miRNA:   3'- aC-CCGUaGCUGCAUGGG-------CGa--UUuaUG- -5'
26763 3' -50.9 NC_005808.1 + 37579 0.66 0.87164
Target:  5'- gGGGCAUCG-CGg---CGCUGAAaGCg -3'
miRNA:   3'- aCCCGUAGCuGCauggGCGAUUUaUG- -5'
26763 3' -50.9 NC_005808.1 + 17533 0.66 0.871639
Target:  5'- cUGGGUggCGAUGcUGCCCGauggUAAcgGCg -3'
miRNA:   3'- -ACCCGuaGCUGC-AUGGGCg---AUUuaUG- -5'
26763 3' -50.9 NC_005808.1 + 15866 0.66 0.871639
Target:  5'- cGGGCGcgcUGGCGgugGCCCgGCUuugcAAUACg -3'
miRNA:   3'- aCCCGUa--GCUGCa--UGGG-CGAu---UUAUG- -5'
26763 3' -50.9 NC_005808.1 + 30472 0.66 0.862328
Target:  5'- gGGGCGccggucaUCG-CGUcACCUGCUGAAa-- -3'
miRNA:   3'- aCCCGU-------AGCuGCA-UGGGCGAUUUaug -5'
26763 3' -50.9 NC_005808.1 + 21350 0.66 0.854468
Target:  5'- cUGGGCAUCGAC---CCCGaguUGAucGUGCc -3'
miRNA:   3'- -ACCCGUAGCUGcauGGGCg--AUU--UAUG- -5'
26763 3' -50.9 NC_005808.1 + 18222 0.66 0.845489
Target:  5'- cGGGCuGUCGggauaagccACGU-UCUGCUGGAUGCc -3'
miRNA:   3'- aCCCG-UAGC---------UGCAuGGGCGAUUUAUG- -5'
26763 3' -50.9 NC_005808.1 + 10756 0.66 0.836261
Target:  5'- aGGGCGcgcUCGACuucgGCCCGCa------ -3'
miRNA:   3'- aCCCGU---AGCUGca--UGGGCGauuuaug -5'
26763 3' -50.9 NC_005808.1 + 24095 0.66 0.836261
Target:  5'- gGGGCAcgGGCac-CCCGCUAcAUGCg -3'
miRNA:   3'- aCCCGUagCUGcauGGGCGAUuUAUG- -5'
26763 3' -50.9 NC_005808.1 + 21125 0.67 0.826794
Target:  5'- -uGGUAUCGACGcUGCCCaGCUug--GCc -3'
miRNA:   3'- acCCGUAGCUGC-AUGGG-CGAuuuaUG- -5'
26763 3' -50.9 NC_005808.1 + 13514 0.67 0.826794
Target:  5'- cGGGCcugaccUCGGCGcccgaggaugACCCGCUGAuggccUACg -3'
miRNA:   3'- aCCCGu-----AGCUGCa---------UGGGCGAUUu----AUG- -5'
26763 3' -50.9 NC_005808.1 + 24474 0.67 0.826794
Target:  5'- cGGGCGacaaguUCGACGUACCggacggCGCgaag-GCg -3'
miRNA:   3'- aCCCGU------AGCUGCAUGG------GCGauuuaUG- -5'
26763 3' -50.9 NC_005808.1 + 13168 0.67 0.797074
Target:  5'- cUGGGCG-CGACGUGCgaGCgcguggGCa -3'
miRNA:   3'- -ACCCGUaGCUGCAUGggCGauuua-UG- -5'
26763 3' -50.9 NC_005808.1 + 39542 0.67 0.786768
Target:  5'- cGGGCGcUUGACGUGCU-GCUGAc--- -3'
miRNA:   3'- aCCCGU-AGCUGCAUGGgCGAUUuaug -5'
26763 3' -50.9 NC_005808.1 + 8151 0.67 0.786768
Target:  5'- cGGGUGUCGGCGcugcgucCCUGCgc-GUGCg -3'
miRNA:   3'- aCCCGUAGCUGCau-----GGGCGauuUAUG- -5'
26763 3' -50.9 NC_005808.1 + 23374 0.67 0.786768
Target:  5'- -cGGU---GGCGUGCCCGCUGAAa-- -3'
miRNA:   3'- acCCGuagCUGCAUGGGCGAUUUaug -5'
26763 3' -50.9 NC_005808.1 + 8460 0.68 0.765631
Target:  5'- -cGGCGUCGAgGUgGCCUGC--GAUGCc -3'
miRNA:   3'- acCCGUAGCUgCA-UGGGCGauUUAUG- -5'
26763 3' -50.9 NC_005808.1 + 5824 0.68 0.743884
Target:  5'- cGGGCAU-GGCGUGCCgcaGCaccGUGCg -3'
miRNA:   3'- aCCCGUAgCUGCAUGGg--CGauuUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.