Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26767 | 3' | -54.9 | NC_005808.1 | + | 30097 | 0.66 | 0.670143 |
Target: 5'- -gCGCCacGGCC-CUUGUCCCA---GGCg -3' miRNA: 3'- caGCGG--CUGGuGAGCAGGGUguuUCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 29416 | 0.66 | 0.670143 |
Target: 5'- -aCGCCGGCCAagggCG-CCCAgCGcGGCc -3' miRNA: 3'- caGCGGCUGGUga--GCaGGGU-GUuUCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 29337 | 0.7 | 0.413902 |
Target: 5'- gGUCGCCGGCCAagucCUCGaaCCACGcgccgguGGCc -3' miRNA: 3'- -CAGCGGCUGGU----GAGCagGGUGUu------UCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 28907 | 1.11 | 0.000603 |
Target: 5'- cGUCGCCGACCACUCGUCCCACAAAGCc -3' miRNA: 3'- -CAGCGGCUGGUGAGCAGGGUGUUUCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 27759 | 0.71 | 0.374205 |
Target: 5'- cUCGCUG-CC-CUCGUCCggcucggacacguaCACGAAGCg -3' miRNA: 3'- cAGCGGCuGGuGAGCAGG--------------GUGUUUCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 25840 | 0.71 | 0.367992 |
Target: 5'- cGUCGCCGGugGCUaCG-CCCAC-GAGCg -3' miRNA: 3'- -CAGCGGCUggUGA-GCaGGGUGuUUCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 25046 | 0.66 | 0.681256 |
Target: 5'- uGUCGCgCGAuCCGC-CGUUaCCAUcgGGCa -3' miRNA: 3'- -CAGCG-GCU-GGUGaGCAG-GGUGuuUCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 23721 | 0.67 | 0.61424 |
Target: 5'- gGUCGCgGGCCAgugcCUCGguggCgCGCAGcAGCg -3' miRNA: 3'- -CAGCGgCUGGU----GAGCa---GgGUGUU-UCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 21937 | 0.69 | 0.463172 |
Target: 5'- -cCGCCGACCAa--GgCCCaACGGGGCa -3' miRNA: 3'- caGCGGCUGGUgagCaGGG-UGUUUCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 21334 | 0.69 | 0.515345 |
Target: 5'- -aUGCCGGCCACcgCG-CCCAgGuuGCc -3' miRNA: 3'- caGCGGCUGGUGa-GCaGGGUgUuuCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 21315 | 0.67 | 0.609768 |
Target: 5'- -aCGCCGACCGCUgGgccgacacuuacgCCgACAugcuGGGCa -3' miRNA: 3'- caGCGGCUGGUGAgCa------------GGgUGU----UUCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 20536 | 0.67 | 0.636625 |
Target: 5'- -gCGCCGACCGCga--CCCGagcAAGCg -3' miRNA: 3'- caGCGGCUGGUGagcaGGGUgu-UUCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 20513 | 0.71 | 0.385932 |
Target: 5'- --aGCCGguacacGCCgGCUCGUUCCAgAAAGCg -3' miRNA: 3'- cagCGGC------UGG-UGAGCAGGGUgUUUCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 19812 | 0.67 | 0.636625 |
Target: 5'- -aUGCUGACCGg----CCCGCAGGGCg -3' miRNA: 3'- caGCGGCUGGUgagcaGGGUGUUUCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 18301 | 0.67 | 0.580807 |
Target: 5'- cUCGCCGACCucAC-CGccCCCACGuGGUc -3' miRNA: 3'- cAGCGGCUGG--UGaGCa-GGGUGUuUCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 18159 | 0.66 | 0.692321 |
Target: 5'- uGUCGCCGagGCCGCgcgCGgcaCCgACAAaucgGGCc -3' miRNA: 3'- -CAGCGGC--UGGUGa--GCa--GGgUGUU----UCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 17999 | 0.67 | 0.603067 |
Target: 5'- aGUCGCCgccgGACUugUCGUCCgAaccuuGCg -3' miRNA: 3'- -CAGCGG----CUGGugAGCAGGgUguuu-CG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 17306 | 0.67 | 0.636625 |
Target: 5'- --gGCCGGCCGCaCGaCCU-CAAGGCa -3' miRNA: 3'- cagCGGCUGGUGaGCaGGGuGUUUCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 15743 | 0.69 | 0.473392 |
Target: 5'- -cCGCCGACCAUuacccaauUCG-CCCGCuccaucGGGGCg -3' miRNA: 3'- caGCGGCUGGUG--------AGCaGGGUG------UUUCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 13545 | 0.66 | 0.647816 |
Target: 5'- uGUCgGCCG-CCugACUCGgugCCCAC--GGCg -3' miRNA: 3'- -CAG-CGGCuGG--UGAGCa--GGGUGuuUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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