Results 1 - 20 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26769 | 3' | -59.5 | NC_005808.1 | + | 29472 | 1.06 | 0.000419 |
Target: 5'- cGACGAAGCGCGCGGCCAGUUCCGCGUc -3' miRNA: 3'- -CUGCUUCGCGCGCCGGUCAAGGCGCA- -5' |
|||||||
26769 | 3' | -59.5 | NC_005808.1 | + | 28620 | 0.76 | 0.08678 |
Target: 5'- aACcGGGCGCGgaugaggcCGGCCAGUUCCGCGc -3' miRNA: 3'- cUGcUUCGCGC--------GCCGGUCAAGGCGCa -5' |
|||||||
26769 | 3' | -59.5 | NC_005808.1 | + | 16258 | 0.75 | 0.097183 |
Target: 5'- uACG-AGCgGCGCGGCCAGUU-CGCGg -3' miRNA: 3'- cUGCuUCG-CGCGCCGGUCAAgGCGCa -5' |
|||||||
26769 | 3' | -59.5 | NC_005808.1 | + | 21739 | 0.71 | 0.188285 |
Target: 5'- cACGgcGCGCGCcgucgugcagucGGUCAGUUcCCGCGa -3' miRNA: 3'- cUGCuuCGCGCG------------CCGGUCAA-GGCGCa -5' |
|||||||
26769 | 3' | -59.5 | NC_005808.1 | + | 14897 | 0.69 | 0.257686 |
Target: 5'- cGGCGAgccgcugccGGCGCGCGGCCuGUauUCCaaGa -3' miRNA: 3'- -CUGCU---------UCGCGCGCCGGuCA--AGGcgCa -5' |
|||||||
26769 | 3' | -59.5 | NC_005808.1 | + | 41901 | 0.69 | 0.263657 |
Target: 5'- gGGCGGuaucuugGGCGCcCGGCCGGcgCCGcCGUa -3' miRNA: 3'- -CUGCU-------UCGCGcGCCGGUCaaGGC-GCA- -5' |
|||||||
26769 | 3' | -59.5 | NC_005808.1 | + | 14757 | 0.69 | 0.278026 |
Target: 5'- -uUGAgcAGCgGCGCGGCCGGcgccaCCGCGg -3' miRNA: 3'- cuGCU--UCG-CGCGCCGGUCaa---GGCGCa -5' |
|||||||
26769 | 3' | -59.5 | NC_005808.1 | + | 3003 | 0.69 | 0.285085 |
Target: 5'- gGACGAAG-GCGCGGCgGGUcauagCUGCu- -3' miRNA: 3'- -CUGCUUCgCGCGCCGgUCAa----GGCGca -5' |
|||||||
26769 | 3' | -59.5 | NC_005808.1 | + | 24005 | 0.69 | 0.278026 |
Target: 5'- uGGCGAaggugGGCGCGuCGGCCAaUUCaGCGa -3' miRNA: 3'- -CUGCU-----UCGCGC-GCCGGUcAAGgCGCa -5' |
|||||||
26769 | 3' | -59.5 | NC_005808.1 | + | 10190 | 0.68 | 0.299626 |
Target: 5'- aGACGuGGCGCGCGGCUuuuuUUCgGUGc -3' miRNA: 3'- -CUGCuUCGCGCGCCGGuc--AAGgCGCa -5' |
|||||||
26769 | 3' | -59.5 | NC_005808.1 | + | 26407 | 0.68 | 0.322501 |
Target: 5'- gGGCGAauGGCGCGUGGCguCGGUgaacUCCGaCGc -3' miRNA: 3'- -CUGCU--UCGCGCGCCG--GUCA----AGGC-GCa -5' |
|||||||
26769 | 3' | -59.5 | NC_005808.1 | + | 25481 | 0.68 | 0.29011 |
Target: 5'- cGAUGAgGGCGCGCucgugcuuggucagGGUCAGgcCCGCGa -3' miRNA: 3'- -CUGCU-UCGCGCG--------------CCGGUCaaGGCGCa -5' |
|||||||
26769 | 3' | -59.5 | NC_005808.1 | + | 9206 | 0.68 | 0.307109 |
Target: 5'- uGCucGGCgGCGCGGCgCAcGUUCUGCGg -3' miRNA: 3'- cUGcuUCG-CGCGCCG-GU-CAAGGCGCa -5' |
|||||||
26769 | 3' | -59.5 | NC_005808.1 | + | 27789 | 0.68 | 0.314734 |
Target: 5'- cACGAAGCGCGCG-CCGcgcagCCGCa- -3' miRNA: 3'- cUGCUUCGCGCGCcGGUcaa--GGCGca -5' |
|||||||
26769 | 3' | -59.5 | NC_005808.1 | + | 39147 | 0.68 | 0.307109 |
Target: 5'- -uCGggGCGCGCGGCg---UCUGUGa -3' miRNA: 3'- cuGCuuCGCGCGCCGgucaAGGCGCa -5' |
|||||||
26769 | 3' | -59.5 | NC_005808.1 | + | 8641 | 0.67 | 0.378189 |
Target: 5'- uGGCGAGGUcgccggccuucaucGCGCGGUCGGcauugcgugCCGCGc -3' miRNA: 3'- -CUGCUUCG--------------CGCGCCGGUCaa-------GGCGCa -5' |
|||||||
26769 | 3' | -59.5 | NC_005808.1 | + | 29590 | 0.67 | 0.380829 |
Target: 5'- cGCGcccAGGCGCGCGguuuGCCAGUugUCCaGCGc -3' miRNA: 3'- cUGC---UUCGCGCGC----CGGUCA--AGG-CGCa -5' |
|||||||
26769 | 3' | -59.5 | NC_005808.1 | + | 39703 | 0.67 | 0.363464 |
Target: 5'- -uCGggGCGCGCGGCg---UCUGUGc -3' miRNA: 3'- cuGCuuCGCGCGCCGgucaAGGCGCa -5' |
|||||||
26769 | 3' | -59.5 | NC_005808.1 | + | 14036 | 0.67 | 0.346655 |
Target: 5'- cGACGu-GCGCGCcgcgauGGCCGGcggCCGCa- -3' miRNA: 3'- -CUGCuuCGCGCG------CCGGUCaa-GGCGca -5' |
|||||||
26769 | 3' | -59.5 | NC_005808.1 | + | 2338 | 0.66 | 0.436132 |
Target: 5'- --aGAAGUGCGUGGCgCGcGUgcgCCGCa- -3' miRNA: 3'- cugCUUCGCGCGCCG-GU-CAa--GGCGca -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home