miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26772 5' -61 NC_005808.1 + 15167 0.66 0.356234
Target:  5'- gGCCuGCgGC-CGCCgggcgCGGUGCgccAGGCg -3'
miRNA:   3'- aCGG-CGaCGaGUGGa----GCCACG---UCCGg -5'
26772 5' -61 NC_005808.1 + 27826 0.66 0.356234
Target:  5'- cGCgCGCUGCcCGCggUGGcGCcGGCCg -3'
miRNA:   3'- aCG-GCGACGaGUGgaGCCaCGuCCGG- -5'
26772 5' -61 NC_005808.1 + 14797 0.66 0.347914
Target:  5'- aUGUCGCUGgaaaccugCACCUCGGcgGCGcuGCCu -3'
miRNA:   3'- -ACGGCGACga------GUGGAGCCa-CGUc-CGG- -5'
26772 5' -61 NC_005808.1 + 7229 0.66 0.347914
Target:  5'- aGCC-CUGCa-ACUUCGGccacuggcGCGGGCCg -3'
miRNA:   3'- aCGGcGACGagUGGAGCCa-------CGUCCGG- -5'
26772 5' -61 NC_005808.1 + 24696 0.66 0.347914
Target:  5'- cGCCcagGCUguCCaUCGGUGCcagucggucGGGCCg -3'
miRNA:   3'- aCGGcgaCGAguGG-AGCCACG---------UCCGG- -5'
26772 5' -61 NC_005808.1 + 8803 0.66 0.347914
Target:  5'- gGCCGCgccgGUcaguaccgaUCugCUgGGU-CGGGCCa -3'
miRNA:   3'- aCGGCGa---CG---------AGugGAgCCAcGUCCGG- -5'
26772 5' -61 NC_005808.1 + 30368 0.66 0.342988
Target:  5'- aUGCCGCUGUugccggugugcugcgUCccgACCagGG-GCAGGCa -3'
miRNA:   3'- -ACGGCGACG---------------AG---UGGagCCaCGUCCGg -5'
26772 5' -61 NC_005808.1 + 22577 0.66 0.342988
Target:  5'- gUGCCGCUuCUCGCCgCGGUuGCgaucuugcacgaagaAGcGCCc -3'
miRNA:   3'- -ACGGCGAcGAGUGGaGCCA-CG---------------UC-CGG- -5'
26772 5' -61 NC_005808.1 + 10797 0.66 0.339733
Target:  5'- uUGCauguaCUGCUgCGCCUCGGcGC-GGCUg -3'
miRNA:   3'- -ACGgc---GACGA-GUGGAGCCaCGuCCGG- -5'
26772 5' -61 NC_005808.1 + 27854 0.66 0.339733
Target:  5'- cGCCGCUGCUCaagaacguguccGCgCUCGccaucuuggcGUGCucGCCc -3'
miRNA:   3'- aCGGCGACGAG------------UG-GAGC----------CACGucCGG- -5'
26772 5' -61 NC_005808.1 + 33939 0.66 0.339733
Target:  5'- aGCCGCUGCaCACagcgaguaCGGcGC-GGCCu -3'
miRNA:   3'- aCGGCGACGaGUGga------GCCaCGuCCGG- -5'
26772 5' -61 NC_005808.1 + 10914 0.66 0.339733
Target:  5'- gUGCUGCagcaguuacuggUGCUUguGgC-CGGUGUAGGCCc -3'
miRNA:   3'- -ACGGCG------------ACGAG--UgGaGCCACGUCCGG- -5'
26772 5' -61 NC_005808.1 + 20611 0.66 0.339733
Target:  5'- cGCCagGCgGCgUCGCaggUCGGUGUcGGCCu -3'
miRNA:   3'- aCGG--CGaCG-AGUGg--AGCCACGuCCGG- -5'
26772 5' -61 NC_005808.1 + 33400 0.66 0.339733
Target:  5'- cGCCGC-GC-CGCCga---GCAGGCCa -3'
miRNA:   3'- aCGGCGaCGaGUGGagccaCGUCCGG- -5'
26772 5' -61 NC_005808.1 + 9404 0.66 0.339733
Target:  5'- aUGUCGC-GCagGCCgCGGgcuUGCAGGUCu -3'
miRNA:   3'- -ACGGCGaCGagUGGaGCC---ACGUCCGG- -5'
26772 5' -61 NC_005808.1 + 11371 0.66 0.331692
Target:  5'- -cCUGCUcGCccggCACCUCGGUGgCgaccugauGGGCCa -3'
miRNA:   3'- acGGCGA-CGa---GUGGAGCCAC-G--------UCCGG- -5'
26772 5' -61 NC_005808.1 + 27416 0.66 0.331692
Target:  5'- cGUCGCgcgccugGCgCACCgcgcccggCGGccGCAGGCCc -3'
miRNA:   3'- aCGGCGa------CGaGUGGa-------GCCa-CGUCCGG- -5'
26772 5' -61 NC_005808.1 + 519 0.66 0.331692
Target:  5'- gGCCaucGCUGgCcgaaUACCUCGGacgugcGCGGGCCg -3'
miRNA:   3'- aCGG---CGAC-Ga---GUGGAGCCa-----CGUCCGG- -5'
26772 5' -61 NC_005808.1 + 10196 0.66 0.323793
Target:  5'- gGCgCGCgGCUUuuUUUCGGUGCuGGCUu -3'
miRNA:   3'- aCG-GCGaCGAGu-GGAGCCACGuCCGG- -5'
26772 5' -61 NC_005808.1 + 25200 0.66 0.323793
Target:  5'- cGCCGCUGa--AUCgaagCGGUGCGucGGCg -3'
miRNA:   3'- aCGGCGACgagUGGa---GCCACGU--CCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.