miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26775 3' -55.4 NC_005808.1 + 28757 0.67 0.537309
Target:  5'- cAGCgCGGUGCGCUucucggcgCGCACGGCg--- -3'
miRNA:   3'- cUUGgGCCGCGCGA--------GCGUGUUGauac -5'
26775 3' -55.4 NC_005808.1 + 12523 0.67 0.537309
Target:  5'- -cGCCCGG-GCGC-CGCACAAa---- -3'
miRNA:   3'- cuUGGGCCgCGCGaGCGUGUUgauac -5'
26775 3' -55.4 NC_005808.1 + 17517 0.67 0.526411
Target:  5'- -cGCCgGGCGCGCUgCGCugGgugGCgAUGc -3'
miRNA:   3'- cuUGGgCCGCGCGA-GCGugU---UGaUAC- -5'
26775 3' -55.4 NC_005808.1 + 38006 0.67 0.526411
Target:  5'- uGACCUGG-GCGgcaUCGCAUAACUAg- -3'
miRNA:   3'- cUUGGGCCgCGCg--AGCGUGUUGAUac -5'
26775 3' -55.4 NC_005808.1 + 7092 0.68 0.515597
Target:  5'- -uACCCacGGCGCGCccacgCGCACGAUg--- -3'
miRNA:   3'- cuUGGG--CCGCGCGa----GCGUGUUGauac -5'
26775 3' -55.4 NC_005808.1 + 18522 0.68 0.494247
Target:  5'- -uGCCCcGCGCGgUCGcCGCuACUGUGc -3'
miRNA:   3'- cuUGGGcCGCGCgAGC-GUGuUGAUAC- -5'
26775 3' -55.4 NC_005808.1 + 23131 0.68 0.494247
Target:  5'- -cACCUGGCGCaa--GCugAACUAUGg -3'
miRNA:   3'- cuUGGGCCGCGcgagCGugUUGAUAC- -5'
26775 3' -55.4 NC_005808.1 + 1129 0.68 0.483724
Target:  5'- cGGCCCGGUGUaaccguuaGCUCGCGCuACg--- -3'
miRNA:   3'- cUUGGGCCGCG--------CGAGCGUGuUGauac -5'
26775 3' -55.4 NC_005808.1 + 29309 0.68 0.47331
Target:  5'- --cCCCGGCGCGCU-GCAauCGGCgcUGa -3'
miRNA:   3'- cuuGGGCCGCGCGAgCGU--GUUGauAC- -5'
26775 3' -55.4 NC_005808.1 + 38211 0.68 0.46301
Target:  5'- aGGCCCGGCGCGacggCGCcUGGCUGc- -3'
miRNA:   3'- cUUGGGCCGCGCga--GCGuGUUGAUac -5'
26775 3' -55.4 NC_005808.1 + 27887 0.68 0.46301
Target:  5'- --uCuuGGCGUGCUCGCcCAGCa--- -3'
miRNA:   3'- cuuGggCCGCGCGAGCGuGUUGauac -5'
26775 3' -55.4 NC_005808.1 + 17289 0.69 0.452829
Target:  5'- cGAAgCCGGCGcCGCgggCGCGCAuccauuccgGCaUAUGg -3'
miRNA:   3'- -CUUgGGCCGC-GCGa--GCGUGU---------UG-AUAC- -5'
26775 3' -55.4 NC_005808.1 + 31651 0.7 0.394459
Target:  5'- --cCCCGGCuGuCGC-CGCGCAACUGc- -3'
miRNA:   3'- cuuGGGCCG-C-GCGaGCGUGUUGAUac -5'
26775 3' -55.4 NC_005808.1 + 33377 0.7 0.385213
Target:  5'- -cGCCgGGCGCGC-CGCAgAACg--- -3'
miRNA:   3'- cuUGGgCCGCGCGaGCGUgUUGauac -5'
26775 3' -55.4 NC_005808.1 + 15180 0.72 0.308661
Target:  5'- cGGGCgCGGUGCGCcaggCGCGCGACg--- -3'
miRNA:   3'- -CUUGgGCCGCGCGa---GCGUGUUGauac -5'
26775 3' -55.4 NC_005808.1 + 2743 0.72 0.293308
Target:  5'- cGGCCCGGCGCuGCUCGgGCGugccgaccACUGc- -3'
miRNA:   3'- cUUGGGCCGCG-CGAGCgUGU--------UGAUac -5'
26775 3' -55.4 NC_005808.1 + 31232 0.73 0.244276
Target:  5'- aGAAcCCCGGCGCGCg-GCcCAGCUAc- -3'
miRNA:   3'- -CUU-GGGCCGCGCGagCGuGUUGAUac -5'
26775 3' -55.4 NC_005808.1 + 39023 0.74 0.231577
Target:  5'- uGACCCGGCGCG-UCGCugAAauUUAUGc -3'
miRNA:   3'- cUUGGGCCGCGCgAGCGugUU--GAUAC- -5'
26775 3' -55.4 NC_005808.1 + 3180 0.74 0.225438
Target:  5'- aAGCCCGGCGUccGCUgCGUACAGCUu-- -3'
miRNA:   3'- cUUGGGCCGCG--CGA-GCGUGUUGAuac -5'
26775 3' -55.4 NC_005808.1 + 38559 0.74 0.219437
Target:  5'- -cGCCCGGCuGCGCUCgacccGCGCGGC-AUGa -3'
miRNA:   3'- cuUGGGCCG-CGCGAG-----CGUGUUGaUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.