miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26777 3' -56 NC_005808.1 + 31510 0.66 0.527557
Target:  5'- --cCGCCGGCGUGcUGCuG-GGCCUCGc -3'
miRNA:   3'- uuuGUGGUCGCGCaACG-CgCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 40591 0.66 0.582974
Target:  5'- --uCGCCAGCGa---GCGCcugGGCCUCAa -3'
miRNA:   3'- uuuGUGGUCGCgcaaCGCG---CUGGAGU- -5'
26777 3' -56 NC_005808.1 + 31091 0.66 0.57177
Target:  5'- -cACGCCAGCGCag-GCGCuGCCc-- -3'
miRNA:   3'- uuUGUGGUCGCGcaaCGCGcUGGagu -5'
26777 3' -56 NC_005808.1 + 13950 0.66 0.560617
Target:  5'- cGGCACCGaucuggcacuGCGCGggaacugGC-CGGCCUCAu -3'
miRNA:   3'- uUUGUGGU----------CGCGCaa-----CGcGCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 13161 0.66 0.57177
Target:  5'- gGAGCACCugGGCGCGacGUGCGAgCg-- -3'
miRNA:   3'- -UUUGUGG--UCGCGCaaCGCGCUgGagu -5'
26777 3' -56 NC_005808.1 + 12551 0.66 0.542903
Target:  5'- cGGCACCAGUGCGaauacguggUguggggcaccaaggGCGCGGCCgugCAg -3'
miRNA:   3'- uUUGUGGUCGCGC---------Aa-------------CGCGCUGGa--GU- -5'
26777 3' -56 NC_005808.1 + 24018 0.66 0.560617
Target:  5'- cGGACgGCCAGgccgucacCGCGa-GCGCGGCCUCc -3'
miRNA:   3'- -UUUG-UGGUC--------GCGCaaCGCGCUGGAGu -5'
26777 3' -56 NC_005808.1 + 14888 0.66 0.527557
Target:  5'- cAugACCGGCGgcgagccgcugcCGgcGCGCGGCCUg- -3'
miRNA:   3'- uUugUGGUCGC------------GCaaCGCGCUGGAgu -5'
26777 3' -56 NC_005808.1 + 30463 0.66 0.57177
Target:  5'- gAAGCG-CAGCGCGUgGCGCGucgcGCCa-- -3'
miRNA:   3'- -UUUGUgGUCGCGCAaCGCGC----UGGagu -5'
26777 3' -56 NC_005808.1 + 28747 0.66 0.560617
Target:  5'- uGGCAucguCCAGCGCGgUGCGCu-UCUCGg -3'
miRNA:   3'- uUUGU----GGUCGCGCaACGCGcuGGAGU- -5'
26777 3' -56 NC_005808.1 + 14806 0.66 0.549525
Target:  5'- -uGCugCGGCuGCGcgGCGCGcGCUUCGu -3'
miRNA:   3'- uuUGugGUCG-CGCaaCGCGC-UGGAGU- -5'
26777 3' -56 NC_005808.1 + 12521 0.66 0.560617
Target:  5'- -----aCAGCGCGUcgaggugcUGCuCGACCUCGg -3'
miRNA:   3'- uuugugGUCGCGCA--------ACGcGCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 2231 0.66 0.560617
Target:  5'- -cACGCgCAGCagGCGgcGCGUGGCCgcgCAa -3'
miRNA:   3'- uuUGUG-GUCG--CGCaaCGCGCUGGa--GU- -5'
26777 3' -56 NC_005808.1 + 29462 0.66 0.549525
Target:  5'- uGGCACCAG-GCGacgaagcGCGCGGCCa-- -3'
miRNA:   3'- uUUGUGGUCgCGCaa-----CGCGCUGGagu -5'
26777 3' -56 NC_005808.1 + 34981 0.66 0.527557
Target:  5'- -cACGuguCCGGCGC--UGCGCGACCa-- -3'
miRNA:   3'- uuUGU---GGUCGCGcaACGCGCUGGagu -5'
26777 3' -56 NC_005808.1 + 22864 0.66 0.57177
Target:  5'- cGGCaACCAGCccaagcaggGCGaUGCGCGgcGCCUCu -3'
miRNA:   3'- uUUG-UGGUCG---------CGCaACGCGC--UGGAGu -5'
26777 3' -56 NC_005808.1 + 35930 0.67 0.516695
Target:  5'- uGAACAUCGGCGUG--GCGCaGACCa-- -3'
miRNA:   3'- -UUUGUGGUCGCGCaaCGCG-CUGGagu -5'
26777 3' -56 NC_005808.1 + 13250 0.67 0.521029
Target:  5'- --cCACCGGCGCGUgguucgaggacuugGCcgGCGACCg-- -3'
miRNA:   3'- uuuGUGGUCGCGCAa-------------CG--CGCUGGagu -5'
26777 3' -56 NC_005808.1 + 29414 0.67 0.516695
Target:  5'- cAACGCCGGCcaaggGCGcccaGCGCGGCCg-- -3'
miRNA:   3'- uUUGUGGUCG-----CGCaa--CGCGCUGGagu -5'
26777 3' -56 NC_005808.1 + 12238 0.67 0.505924
Target:  5'- cAGCAgCGGCGgGUUcucGCGCGACgaCAa -3'
miRNA:   3'- uUUGUgGUCGCgCAA---CGCGCUGgaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.