miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26777 3' -56 NC_005808.1 + 32290 1.06 0.000832
Target:  5'- aAAACACCAGCGCGUUGCGCGACCUCAu -3'
miRNA:   3'- -UUUGUGGUCGCGCAACGCGCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 23679 0.86 0.025053
Target:  5'- aAAACGCCAGCGCGg-GCGcCGACCUCAu -3'
miRNA:   3'- -UUUGUGGUCGCGCaaCGC-GCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 12472 0.79 0.088297
Target:  5'- ---gGCCGGCgGCGUguucugGCGCGGCCUCAu -3'
miRNA:   3'- uuugUGGUCG-CGCAa-----CGCGCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 7931 0.77 0.109606
Target:  5'- cGAACACCGGCGCGaggauuuccgacagcUUGCccGUGGCCUCGg -3'
miRNA:   3'- -UUUGUGGUCGCGC---------------AACG--CGCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 20060 0.76 0.125192
Target:  5'- cAACACCGgcacgcGCGCGcUGCGCGugCUCGc -3'
miRNA:   3'- uUUGUGGU------CGCGCaACGCGCugGAGU- -5'
26777 3' -56 NC_005808.1 + 31992 0.75 0.157263
Target:  5'- cGACGCCAGCGUccUGUGCGAaacCCUCGa -3'
miRNA:   3'- uUUGUGGUCGCGcaACGCGCU---GGAGU- -5'
26777 3' -56 NC_005808.1 + 12381 0.74 0.175947
Target:  5'- --uCGCCgAGUGCG-UGCGCGugCUCAa -3'
miRNA:   3'- uuuGUGG-UCGCGCaACGCGCugGAGU- -5'
26777 3' -56 NC_005808.1 + 18061 0.74 0.186011
Target:  5'- --uUACCGGCGCGggGUGCGugCUgGg -3'
miRNA:   3'- uuuGUGGUCGCGCaaCGCGCugGAgU- -5'
26777 3' -56 NC_005808.1 + 7767 0.73 0.20767
Target:  5'- cAGCACCGGCGCGaucUGCGcCGGCgUCc -3'
miRNA:   3'- uUUGUGGUCGCGCa--ACGC-GCUGgAGu -5'
26777 3' -56 NC_005808.1 + 34484 0.73 0.20767
Target:  5'- cAACGCCGGcCGCGcgGUGCagGGCCUCAa -3'
miRNA:   3'- uUUGUGGUC-GCGCaaCGCG--CUGGAGU- -5'
26777 3' -56 NC_005808.1 + 24736 0.73 0.225315
Target:  5'- --cCACC-GCGCc-UGCGCGGCCUCGa -3'
miRNA:   3'- uuuGUGGuCGCGcaACGCGCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 17402 0.72 0.244215
Target:  5'- ---gGCCAGCG-GUcGCGCGugCUCAu -3'
miRNA:   3'- uuugUGGUCGCgCAaCGCGCugGAGU- -5'
26777 3' -56 NC_005808.1 + 4879 0.72 0.250802
Target:  5'- -uGC-CCAGCGCGgcGacgGCGGCCUCGu -3'
miRNA:   3'- uuUGuGGUCGCGCaaCg--CGCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 4675 0.72 0.250802
Target:  5'- cGGGCACCAGCGCGccggauaGCGCGGCg--- -3'
miRNA:   3'- -UUUGUGGUCGCGCaa-----CGCGCUGgagu -5'
26777 3' -56 NC_005808.1 + 28680 0.71 0.27862
Target:  5'- --uCGCCAGCGCGgcGCGCcACgUCGu -3'
miRNA:   3'- uuuGUGGUCGCGCaaCGCGcUGgAGU- -5'
26777 3' -56 NC_005808.1 + 19143 0.71 0.301057
Target:  5'- -cACGCCGGCGUGUacGCGCGAaCCa-- -3'
miRNA:   3'- uuUGUGGUCGCGCAa-CGCGCU-GGagu -5'
26777 3' -56 NC_005808.1 + 21159 0.71 0.30884
Target:  5'- -cGCGCCcugguucaacAGCGCGgccugcUGCGCGGCCUg- -3'
miRNA:   3'- uuUGUGG----------UCGCGCa-----ACGCGCUGGAgu -5'
26777 3' -56 NC_005808.1 + 14848 0.7 0.324863
Target:  5'- cGGACGagggCAGCGaGUUGCGCGaggGCCUCAu -3'
miRNA:   3'- -UUUGUg---GUCGCgCAACGCGC---UGGAGU- -5'
26777 3' -56 NC_005808.1 + 9870 0.7 0.350042
Target:  5'- uGGCACCGGCGCGcUGCuucuCGGCCa-- -3'
miRNA:   3'- uUUGUGGUCGCGCaACGc---GCUGGagu -5'
26777 3' -56 NC_005808.1 + 32127 0.69 0.367583
Target:  5'- ---gGCCGGUGC--UGCGCGACUUCc -3'
miRNA:   3'- uuugUGGUCGCGcaACGCGCUGGAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.