miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26777 3' -56 NC_005808.1 + 7931 0.77 0.109606
Target:  5'- cGAACACCGGCGCGaggauuuccgacagcUUGCccGUGGCCUCGg -3'
miRNA:   3'- -UUUGUGGUCGCGC---------------AACG--CGCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 20292 0.67 0.505924
Target:  5'- -cGCACCaguAGCGgGUUGCucgGCGGCCg-- -3'
miRNA:   3'- uuUGUGG---UCGCgCAACG---CGCUGGagu -5'
26777 3' -56 NC_005808.1 + 1447 0.68 0.46387
Target:  5'- cAAACACCuucuugacGGCGCGgucgGCGGCCUCc -3'
miRNA:   3'- -UUUGUGG--------UCGCGCaacgCGCUGGAGu -5'
26777 3' -56 NC_005808.1 + 36860 0.68 0.46387
Target:  5'- -uGC-CCGGCGCGcUGgGCGAUCUg- -3'
miRNA:   3'- uuUGuGGUCGCGCaACgCGCUGGAgu -5'
26777 3' -56 NC_005808.1 + 8740 0.68 0.46387
Target:  5'- gGGACACCAGgGCGc-GCGCGuauucacgugccGCUUCGg -3'
miRNA:   3'- -UUUGUGGUCgCGCaaCGCGC------------UGGAGU- -5'
26777 3' -56 NC_005808.1 + 27485 0.68 0.443539
Target:  5'- -cGCACCA-CGCGaggaUGCcgGCGGCCUCGg -3'
miRNA:   3'- uuUGUGGUcGCGCa---ACG--CGCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 17598 0.68 0.423718
Target:  5'- uAAACGgCuGCGCGUUGuCGauacCGGCCUCGa -3'
miRNA:   3'- -UUUGUgGuCGCGCAAC-GC----GCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 33945 0.69 0.404437
Target:  5'- -uGCACaCAGCGaGUacgGCGCGGCCUgGg -3'
miRNA:   3'- uuUGUG-GUCGCgCAa--CGCGCUGGAgU- -5'
26777 3' -56 NC_005808.1 + 13017 0.69 0.376578
Target:  5'- --cCGCgCAGCGCaGUgGCGaCGGCCUCGu -3'
miRNA:   3'- uuuGUG-GUCGCG-CAaCGC-GCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 12392 0.69 0.376578
Target:  5'- cGAUGCCuGCGCGcUUGUauGCGGCCUUg -3'
miRNA:   3'- uUUGUGGuCGCGC-AACG--CGCUGGAGu -5'
26777 3' -56 NC_005808.1 + 9870 0.7 0.350042
Target:  5'- uGGCACCGGCGCGcUGCuucuCGGCCa-- -3'
miRNA:   3'- uUUGUGGUCGCGCaACGc---GCUGGagu -5'
26777 3' -56 NC_005808.1 + 21159 0.71 0.30884
Target:  5'- -cGCGCCcugguucaacAGCGCGgccugcUGCGCGGCCUg- -3'
miRNA:   3'- uuUGUGG----------UCGCGCa-----ACGCGCUGGAgu -5'
26777 3' -56 NC_005808.1 + 28680 0.71 0.27862
Target:  5'- --uCGCCAGCGCGgcGCGCcACgUCGu -3'
miRNA:   3'- uuuGUGGUCGCGCaaCGCGcUGgAGU- -5'
26777 3' -56 NC_005808.1 + 4879 0.72 0.250802
Target:  5'- -uGC-CCAGCGCGgcGacgGCGGCCUCGu -3'
miRNA:   3'- uuUGuGGUCGCGCaaCg--CGCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 4675 0.72 0.250802
Target:  5'- cGGGCACCAGCGCGccggauaGCGCGGCg--- -3'
miRNA:   3'- -UUUGUGGUCGCGCaa-----CGCGCUGgagu -5'
26777 3' -56 NC_005808.1 + 24736 0.73 0.225315
Target:  5'- --cCACC-GCGCc-UGCGCGGCCUCGa -3'
miRNA:   3'- uuuGUGGuCGCGcaACGCGCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 7767 0.73 0.20767
Target:  5'- cAGCACCGGCGCGaucUGCGcCGGCgUCc -3'
miRNA:   3'- uUUGUGGUCGCGCa--ACGC-GCUGgAGu -5'
26777 3' -56 NC_005808.1 + 18061 0.74 0.186011
Target:  5'- --uUACCGGCGCGggGUGCGugCUgGg -3'
miRNA:   3'- uuuGUGGUCGCGCaaCGCGCugGAgU- -5'
26777 3' -56 NC_005808.1 + 31992 0.75 0.157263
Target:  5'- cGACGCCAGCGUccUGUGCGAaacCCUCGa -3'
miRNA:   3'- uUUGUGGUCGCGcaACGCGCU---GGAGU- -5'
26777 3' -56 NC_005808.1 + 32290 1.06 0.000832
Target:  5'- aAAACACCAGCGCGUUGCGCGACCUCAu -3'
miRNA:   3'- -UUUGUGGUCGCGCAACGCGCUGGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.