miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26777 3' -56 NC_005808.1 + 1447 0.68 0.46387
Target:  5'- cAAACACCuucuugacGGCGCGgucgGCGGCCUCc -3'
miRNA:   3'- -UUUGUGG--------UCGCGCaacgCGCUGGAGu -5'
26777 3' -56 NC_005808.1 + 2231 0.66 0.560617
Target:  5'- -cACGCgCAGCagGCGgcGCGUGGCCgcgCAa -3'
miRNA:   3'- uuUGUG-GUCG--CGCaaCGCGCUGGa--GU- -5'
26777 3' -56 NC_005808.1 + 2574 0.68 0.46387
Target:  5'- cGGC-CCAGCGCG-UGCGCGcGCUUg- -3'
miRNA:   3'- uUUGuGGUCGCGCaACGCGC-UGGAgu -5'
26777 3' -56 NC_005808.1 + 3838 0.67 0.474217
Target:  5'- cGACcaauCCAGCGCacuUUGCGC-ACCUCGc -3'
miRNA:   3'- uUUGu---GGUCGCGc--AACGCGcUGGAGU- -5'
26777 3' -56 NC_005808.1 + 4675 0.72 0.250802
Target:  5'- cGGGCACCAGCGCGccggauaGCGCGGCg--- -3'
miRNA:   3'- -UUUGUGGUCGCGCaa-----CGCGCUGgagu -5'
26777 3' -56 NC_005808.1 + 4879 0.72 0.250802
Target:  5'- -uGC-CCAGCGCGgcGacgGCGGCCUCGu -3'
miRNA:   3'- uuUGuGGUCGCGCaaCg--CGCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 7767 0.73 0.20767
Target:  5'- cAGCACCGGCGCGaucUGCGcCGGCgUCc -3'
miRNA:   3'- uUUGUGGUCGCGCa--ACGC-GCUGgAGu -5'
26777 3' -56 NC_005808.1 + 7931 0.77 0.109606
Target:  5'- cGAACACCGGCGCGaggauuuccgacagcUUGCccGUGGCCUCGg -3'
miRNA:   3'- -UUUGUGGUCGCGC---------------AACG--CGCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 8442 0.68 0.46387
Target:  5'- gGAACAUCGGCGCGaUGU-CGGCgUCGa -3'
miRNA:   3'- -UUUGUGGUCGCGCaACGcGCUGgAGU- -5'
26777 3' -56 NC_005808.1 + 8740 0.68 0.46387
Target:  5'- gGGACACCAGgGCGc-GCGCGuauucacgugccGCUUCGg -3'
miRNA:   3'- -UUUGUGGUCgCGCaaCGCGC------------UGGAGU- -5'
26777 3' -56 NC_005808.1 + 9521 0.67 0.505924
Target:  5'- ---gGCCGcCGCGUcgcUGCGCGACC-CGa -3'
miRNA:   3'- uuugUGGUcGCGCA---ACGCGCUGGaGU- -5'
26777 3' -56 NC_005808.1 + 9576 0.67 0.505924
Target:  5'- cGAGCAuCCGGuCGaacaCGUUGCGC-ACCUCGg -3'
miRNA:   3'- -UUUGU-GGUC-GC----GCAACGCGcUGGAGU- -5'
26777 3' -56 NC_005808.1 + 9870 0.7 0.350042
Target:  5'- uGGCACCGGCGCGcUGCuucuCGGCCa-- -3'
miRNA:   3'- uUUGUGGUCGCGCaACGc---GCUGGagu -5'
26777 3' -56 NC_005808.1 + 10494 0.67 0.516695
Target:  5'- cAGCgGCCAGgGCGUUGagcaaCGCGGCCg-- -3'
miRNA:   3'- uUUG-UGGUCgCGCAAC-----GCGCUGGagu -5'
26777 3' -56 NC_005808.1 + 12238 0.67 0.505924
Target:  5'- cAGCAgCGGCGgGUUcucGCGCGACgaCAa -3'
miRNA:   3'- uUUGUgGUCGCgCAA---CGCGCUGgaGU- -5'
26777 3' -56 NC_005808.1 + 12381 0.74 0.175947
Target:  5'- --uCGCCgAGUGCG-UGCGCGugCUCAa -3'
miRNA:   3'- uuuGUGG-UCGCGCaACGCGCugGAGU- -5'
26777 3' -56 NC_005808.1 + 12392 0.69 0.376578
Target:  5'- cGAUGCCuGCGCGcUUGUauGCGGCCUUg -3'
miRNA:   3'- uUUGUGGuCGCGC-AACG--CGCUGGAGu -5'
26777 3' -56 NC_005808.1 + 12472 0.79 0.088297
Target:  5'- ---gGCCGGCgGCGUguucugGCGCGGCCUCAu -3'
miRNA:   3'- uuugUGGUCG-CGCAa-----CGCGCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 12521 0.66 0.560617
Target:  5'- -----aCAGCGCGUcgaggugcUGCuCGACCUCGg -3'
miRNA:   3'- uuugugGUCGCGCA--------ACGcGCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 12551 0.66 0.542903
Target:  5'- cGGCACCAGUGCGaauacguggUguggggcaccaaggGCGCGGCCgugCAg -3'
miRNA:   3'- uUUGUGGUCGCGC---------Aa-------------CGCGCUGGa--GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.