Results 1 - 20 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26778 | 3' | -53.2 | NC_005808.1 | + | 32402 | 1.11 | 0.000763 |
Target: 5'- cAGCACCGAAAAAAAGCCGCGCGCCACg -3' miRNA: 3'- -UCGUGGCUUUUUUUCGGCGCGCGGUG- -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 18853 | 0.81 | 0.102955 |
Target: 5'- uGGCGCCGGcauggcgcuGCUGCGCGCCACc -3' miRNA: 3'- -UCGUGGCUuuuuuu---CGGCGCGCGGUG- -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 20748 | 0.78 | 0.171788 |
Target: 5'- uGGCGCCGu---AGAGgCGCuGCGCCGCg -3' miRNA: 3'- -UCGUGGCuuuuUUUCgGCG-CGCGGUG- -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 17263 | 0.77 | 0.176236 |
Target: 5'- cGGCaaGCCGggGAuauugccguccacGAAGCCG-GCGCCGCg -3' miRNA: 3'- -UCG--UGGCuuUU-------------UUUCGGCgCGCGGUG- -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 3869 | 0.77 | 0.181812 |
Target: 5'- aGGCGCCGucgcuguAGGCCGCGCuGCCGu -3' miRNA: 3'- -UCGUGGCuuuuu--UUCGGCGCG-CGGUg -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 27457 | 0.77 | 0.187015 |
Target: 5'- uGGCGCUGGuau---GCCaGCGCGCCGCg -3' miRNA: 3'- -UCGUGGCUuuuuuuCGG-CGCGCGGUG- -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 32611 | 0.77 | 0.197817 |
Target: 5'- uGGC-CCGcgucAAGGGCCGCGaCGCCGCg -3' miRNA: 3'- -UCGuGGCuuu-UUUUCGGCGC-GCGGUG- -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 35248 | 0.76 | 0.221057 |
Target: 5'- cGaCGCCGAGGucGAGGCCGCGCucaagGCCAUg -3' miRNA: 3'- uC-GUGGCUUUu-UUUCGGCGCG-----CGGUG- -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 37710 | 0.76 | 0.221057 |
Target: 5'- --gGCCGAAAAcGAGGCCGcCGuCGCCGCg -3' miRNA: 3'- ucgUGGCUUUU-UUUCGGC-GC-GCGGUG- -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 35518 | 0.76 | 0.221057 |
Target: 5'- cGCGCCGugGGuAGGCCGCGgCGUCAUg -3' miRNA: 3'- uCGUGGCuuUUuUUCGGCGC-GCGGUG- -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 36303 | 0.75 | 0.239982 |
Target: 5'- cGCACCGGAGAuAAGCCccgGCGCcccaGCCAa -3' miRNA: 3'- uCGUGGCUUUUuUUCGG---CGCG----CGGUg -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 18445 | 0.75 | 0.246585 |
Target: 5'- uGCACCGAAAacguGAcGGUCGCGgCGCCGg -3' miRNA: 3'- uCGUGGCUUU----UUuUCGGCGC-GCGGUg -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 18159 | 0.75 | 0.246585 |
Target: 5'- uGuCGCCGA-----GGCCGCGCGCgGCa -3' miRNA: 3'- uC-GUGGCUuuuuuUCGGCGCGCGgUG- -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 40246 | 0.75 | 0.260241 |
Target: 5'- uGCagGCCGAAuuGcGGCgcaCGCGCGCCACg -3' miRNA: 3'- uCG--UGGCUUuuUuUCG---GCGCGCGGUG- -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 27979 | 0.75 | 0.260241 |
Target: 5'- cGGCGCCGGAAGcaugGAAGCCGaCGCaCUGCu -3' miRNA: 3'- -UCGUGGCUUUU----UUUCGGC-GCGcGGUG- -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 9995 | 0.74 | 0.289393 |
Target: 5'- uGGCGgggUCGAAAGu--GCCGCGCGCC-Cg -3' miRNA: 3'- -UCGU---GGCUUUUuuuCGGCGCGCGGuG- -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 20492 | 0.74 | 0.302538 |
Target: 5'- cGCGCUGGAAcaguggguuacGGucauucacgccaucGAGCCGCGCGCCGa -3' miRNA: 3'- uCGUGGCUUU-----------UU--------------UUCGGCGCGCGGUg -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 26336 | 0.74 | 0.304905 |
Target: 5'- cGCACCGcGAAcuGGCCGCGcCGCUc- -3' miRNA: 3'- uCGUGGCuUUUuuUCGGCGC-GCGGug -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 27680 | 0.73 | 0.312897 |
Target: 5'- -cCACCGuggucuuGGAAuacAGGCCGCGCGCCGg -3' miRNA: 3'- ucGUGGCu------UUUU---UUCGGCGCGCGGUg -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 16943 | 0.73 | 0.321047 |
Target: 5'- cGGCGCCGucc---AGCaGCGUGCCGCg -3' miRNA: 3'- -UCGUGGCuuuuuuUCGgCGCGCGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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