Results 1 - 20 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26778 | 3' | -53.2 | NC_005808.1 | + | 191 | 0.7 | 0.478489 |
Target: 5'- gGGCACCGucacgcuGCCGgGCGaCACg -3' miRNA: 3'- -UCGUGGCuuuuuuuCGGCgCGCgGUG- -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 295 | 0.66 | 0.741856 |
Target: 5'- uGCGCCGGAAGGcgcGCUcuuccguccaggGCGUGCCGu -3' miRNA: 3'- uCGUGGCUUUUUuu-CGG------------CGCGCGGUg -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 379 | 0.72 | 0.391879 |
Target: 5'- uGGCcuGCCGAuuGAGcgcGGCCaGCGCGCgACu -3' miRNA: 3'- -UCG--UGGCUuuUUU---UCGG-CGCGCGgUG- -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 1692 | 0.66 | 0.697256 |
Target: 5'- aGGUAgUCGAGAAAuucGCCGUGgGCCGg -3' miRNA: 3'- -UCGU-GGCUUUUUuu-CGGCGCgCGGUg -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 1969 | 0.68 | 0.57122 |
Target: 5'- cGGCcCUGggGGAAGGCaCGCuGUagGCCGCg -3' miRNA: 3'- -UCGuGGCuuUUUUUCG-GCG-CG--CGGUG- -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 2443 | 0.67 | 0.674489 |
Target: 5'- aGGCGCCGAAAcugcGGCCcagGCGCuCGCc -3' miRNA: 3'- -UCGUGGCUUUuuu-UCGGcg-CGCG-GUG- -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 2504 | 0.66 | 0.730855 |
Target: 5'- gAGCGCCGAGAuuAGGCgGgGCuUCGg -3' miRNA: 3'- -UCGUGGCUUUuuUUCGgCgCGcGGUg -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 2897 | 0.68 | 0.594047 |
Target: 5'- gGGCACaGAc-----GCCGCGCGCCcCg -3' miRNA: 3'- -UCGUGgCUuuuuuuCGGCGCGCGGuG- -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 3869 | 0.77 | 0.181812 |
Target: 5'- aGGCGCCGucgcuguAGGCCGCGCuGCCGu -3' miRNA: 3'- -UCGUGGCuuuuu--UUCGGCGCG-CGGUg -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 4142 | 0.66 | 0.708542 |
Target: 5'- cGGCGCauaguGGAAGCCGCccaccuugcGCGCCGu -3' miRNA: 3'- -UCGUGgcuuuUUUUCGGCG---------CGCGGUg -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 4196 | 0.71 | 0.451266 |
Target: 5'- gGGCGCCGAAAAGuuggaaucGGCgCGCaccGUGCCAUc -3' miRNA: 3'- -UCGUGGCUUUUUu-------UCG-GCG---CGCGGUG- -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 4391 | 0.67 | 0.64004 |
Target: 5'- aGGCGCCGucgcgccGGGCCuugaGCGUGCgGCa -3' miRNA: 3'- -UCGUGGCuuuuu--UUCGG----CGCGCGgUG- -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 4434 | 0.68 | 0.594047 |
Target: 5'- cGCGCCaGGGGGAAGCCGCcagcgGUGgCACc -3' miRNA: 3'- uCGUGGcUUUUUUUCGGCG-----CGCgGUG- -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 4496 | 0.68 | 0.605518 |
Target: 5'- -cCGCCGGAu----GCgCGCgGCGCCACa -3' miRNA: 3'- ucGUGGCUUuuuuuCG-GCG-CGCGGUG- -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 5125 | 0.71 | 0.420941 |
Target: 5'- uGGCGCCGuuGAAcuGCaaCGUGCCGCg -3' miRNA: 3'- -UCGUGGCuuUUUuuCGgcGCGCGGUG- -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 5370 | 0.69 | 0.515254 |
Target: 5'- uGCACCGcgcccAGGGUuaugucacuggUGCGCGCCGCg -3' miRNA: 3'- uCGUGGCuuuu-UUUCG-----------GCGCGCGGUG- -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 5753 | 0.68 | 0.582611 |
Target: 5'- cGCGCCGGGc---AGCgaGUGCGCCAg -3' miRNA: 3'- uCGUGGCUUuuuuUCGg-CGCGCGGUg -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 5807 | 0.67 | 0.651546 |
Target: 5'- cAGCGCCagcGGAuAGucGGGCaugGCGUGCCGCa -3' miRNA: 3'- -UCGUGG---CUUuUU--UUCGg--CGCGCGGUG- -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 6371 | 0.66 | 0.741856 |
Target: 5'- gGGCGCUGGguuacaccAGGucGGCCGCcGCGgCGCc -3' miRNA: 3'- -UCGUGGCU--------UUUuuUCGGCG-CGCgGUG- -5' |
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26778 | 3' | -53.2 | NC_005808.1 | + | 8321 | 0.66 | 0.708542 |
Target: 5'- cGCGCUGcucGGGGAAAGuuGCGCGUg-- -3' miRNA: 3'- uCGUGGC---UUUUUUUCggCGCGCGgug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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