miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26778 3' -53.2 NC_005808.1 + 42434 0.69 0.54188
Target:  5'- cGaCACCGggGcgcauccgccugcggGGAAGCCuG-GCGCCACg -3'
miRNA:   3'- uC-GUGGCuuU---------------UUUUCGG-CgCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 42358 0.7 0.482749
Target:  5'- -cCACCGggGAAAc-CCaGCGCGCCAa -3'
miRNA:   3'- ucGUGGCuuUUUUucGG-CGCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 42143 0.66 0.730855
Target:  5'- cAGCGcCCGcAAGcuGGCCGCGCagcaGCC-Ca -3'
miRNA:   3'- -UCGU-GGCuUUUuuUCGGCGCG----CGGuG- -5'
26778 3' -53.2 NC_005808.1 + 41960 0.67 0.651546
Target:  5'- gGGCACCGAcucGAcgccGGAcGCCGUGU-CCACg -3'
miRNA:   3'- -UCGUGGCU---UU----UUUuCGGCGCGcGGUG- -5'
26778 3' -53.2 NC_005808.1 + 41913 0.68 0.628526
Target:  5'- gGGCGCCc------GGCCG-GCGCCGCc -3'
miRNA:   3'- -UCGUGGcuuuuuuUCGGCgCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 41531 0.68 0.60437
Target:  5'- cGCGCCGGgucgcacAGGAAAuCCGCGagcgaauaCGCCACg -3'
miRNA:   3'- uCGUGGCU-------UUUUUUcGGCGC--------GCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 41487 0.68 0.606667
Target:  5'- cGgGCCGAugcgcgacauGCCGCGCGaCACg -3'
miRNA:   3'- uCgUGGCUuuuuuu----CGGCGCGCgGUG- -5'
26778 3' -53.2 NC_005808.1 + 41240 0.7 0.482749
Target:  5'- cGGuCGCCGGAugcgcAAGGCCGC-CGaCCACg -3'
miRNA:   3'- -UC-GUGGCUUuu---UUUCGGCGcGC-GGUG- -5'
26778 3' -53.2 NC_005808.1 + 41115 0.68 0.633132
Target:  5'- cAGCACUGcGAuaccccggccugccaGGAGGCCGCcgaccGCGCCGu -3'
miRNA:   3'- -UCGUGGCuUU---------------UUUUCGGCG-----CGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 41004 0.71 0.420941
Target:  5'- cGCACuCGAccaccAGGAAGGCgGCG-GCCACu -3'
miRNA:   3'- uCGUG-GCU-----UUUUUUCGgCGCgCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 40635 0.66 0.741856
Target:  5'- cGUGCCuucccccAGGGCCGCGCGCUc- -3'
miRNA:   3'- uCGUGGcuuuu--UUUCGGCGCGCGGug -5'
26778 3' -53.2 NC_005808.1 + 40483 0.66 0.730855
Target:  5'- uGCACgaUGAAuuGAAGCagcgucauuggGCGCGCUACa -3'
miRNA:   3'- uCGUG--GCUUuuUUUCGg----------CGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 40327 0.66 0.701779
Target:  5'- cGGCACUGuacgcgaugaucgacAAGAAGauucauugcgcGGCCaCGCGCCGCc -3'
miRNA:   3'- -UCGUGGC---------------UUUUUU-----------UCGGcGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 40246 0.75 0.260241
Target:  5'- uGCagGCCGAAuuGcGGCgcaCGCGCGCCACg -3'
miRNA:   3'- uCG--UGGCUUuuUuUCG---GCGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 40211 0.7 0.491324
Target:  5'- aGGCAgCGAccgccauGCCGUGCGCCuCg -3'
miRNA:   3'- -UCGUgGCUuuuuuu-CGGCGCGCGGuG- -5'
26778 3' -53.2 NC_005808.1 + 40162 0.68 0.617015
Target:  5'- uGGCGCCGAucuucGAGGCCGgccUGCuGCCGu -3'
miRNA:   3'- -UCGUGGCUuuu--UUUCGGC---GCG-CGGUg -5'
26778 3' -53.2 NC_005808.1 + 39868 0.68 0.628526
Target:  5'- cAGCGCCG------GGCCGCGCucaagcguccgGCCAa -3'
miRNA:   3'- -UCGUGGCuuuuuuUCGGCGCG-----------CGGUg -5'
26778 3' -53.2 NC_005808.1 + 39575 0.67 0.651546
Target:  5'- cAGCACUGGAAGGacGAGCaGCuaugaccCGCCGCg -3'
miRNA:   3'- -UCGUGGCUUUUU--UUCGgCGc------GCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 38896 0.71 0.420941
Target:  5'- uGCGCCGcau-GGGGCaGCGCGUCGCc -3'
miRNA:   3'- uCGUGGCuuuuUUUCGgCGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 38858 0.71 0.408187
Target:  5'- cGGCACCGAcguGcccaccaccggcguGAAcGGCaCGgGCGCCACg -3'
miRNA:   3'- -UCGUGGCU---U--------------UUUuUCG-GCgCGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.