miRNA display CGI


Results 21 - 40 of 188 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26778 3' -53.2 NC_005808.1 + 8460 0.68 0.582611
Target:  5'- cGGCGUCGAGGu--GGCCuGCGaUGCCGCa -3'
miRNA:   3'- -UCGUGGCUUUuuuUCGG-CGC-GCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 8686 0.68 0.57122
Target:  5'- uGCGCCGccc---AGgUGUGCGCCGCg -3'
miRNA:   3'- uCGUGGCuuuuuuUCgGCGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 8815 0.69 0.526288
Target:  5'- cAGUACCGAucugcuGGGUCGgGCcaGCCGCa -3'
miRNA:   3'- -UCGUGGCUuuuu--UUCGGCgCG--CGGUG- -5'
26778 3' -53.2 NC_005808.1 + 8970 0.68 0.58718
Target:  5'- cGUGCCGGAuucgcagcgguGGCCGUGCcGCCAg -3'
miRNA:   3'- uCGUGGCUUuuuu-------UCGGCGCG-CGGUg -5'
26778 3' -53.2 NC_005808.1 + 9186 0.66 0.715275
Target:  5'- uGGCGCCGucgacguuGGCCugcucggcgGCGCGgCGCa -3'
miRNA:   3'- -UCGUGGCuuuuuu--UCGG---------CGCGCgGUG- -5'
26778 3' -53.2 NC_005808.1 + 9508 0.67 0.685901
Target:  5'- --gGgCGAGGAuguAGGCCGcCGCGUCGCu -3'
miRNA:   3'- ucgUgGCUUUUu--UUCGGC-GCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 9683 0.67 0.674489
Target:  5'- cAGCcaGCCGugc--AGGCCGUG-GCCGCa -3'
miRNA:   3'- -UCG--UGGCuuuuuUUCGGCGCgCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 9700 0.66 0.719746
Target:  5'- gGGCGCCuugcccucGAAGAgauacgccucGAAGCCGCGgGCgAa -3'
miRNA:   3'- -UCGUGG--------CUUUU----------UUUCGGCGCgCGgUg -5'
26778 3' -53.2 NC_005808.1 + 9956 0.68 0.582611
Target:  5'- cGGCGCCGAAcuucgacaGGAcAGCacCGCGgCGUCGCg -3'
miRNA:   3'- -UCGUGGCUU--------UUUuUCG--GCGC-GCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 9995 0.74 0.289393
Target:  5'- uGGCGgggUCGAAAGu--GCCGCGCGCC-Cg -3'
miRNA:   3'- -UCGU---GGCUUUUuuuCGGCGCGCGGuG- -5'
26778 3' -53.2 NC_005808.1 + 10297 0.66 0.697256
Target:  5'- uGGCGgCGAu--GAGGUCGCGCaaCGCg -3'
miRNA:   3'- -UCGUgGCUuuuUUUCGGCGCGcgGUG- -5'
26778 3' -53.2 NC_005808.1 + 10485 0.67 0.674489
Target:  5'- cAGCACCGGcccGAAcgGGCCGUGCuCUu- -3'
miRNA:   3'- -UCGUGGCU---UUUuuUCGGCGCGcGGug -5'
26778 3' -53.2 NC_005808.1 + 10861 0.72 0.382487
Target:  5'- cAGCGCauauuuuuaggCGuGAAAAAGcCCGCGCGCgGCg -3'
miRNA:   3'- -UCGUG-----------GCuUUUUUUC-GGCGCGCGgUG- -5'
26778 3' -53.2 NC_005808.1 + 11355 0.73 0.321047
Target:  5'- cGC-CCGGcucguAGcuGGGCCGCGCGCCGg -3'
miRNA:   3'- uCGuGGCU-----UUuuUUCGGCGCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 11594 0.66 0.741856
Target:  5'- aAGC-CCGugGAcAGGUCGCGCGUgaGCa -3'
miRNA:   3'- -UCGuGGCuuUUuUUCGGCGCGCGg-UG- -5'
26778 3' -53.2 NC_005808.1 + 11884 0.72 0.373245
Target:  5'- cGCAuuCCGAugGAGAAAGCCauGCcCGCCACa -3'
miRNA:   3'- uCGU--GGCU--UUUUUUCGG--CGcGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 12109 0.66 0.741856
Target:  5'- gAGCACgguuucaauCGGcAGGuuGGCgCGaCGCGCCACg -3'
miRNA:   3'- -UCGUG---------GCU-UUUuuUCG-GC-GCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 12502 0.7 0.504315
Target:  5'- cGC-CUGGGAcAAGGGCCGUggcgcccggGCGCCGCa -3'
miRNA:   3'- uCGuGGCUUU-UUUUCGGCG---------CGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 12625 0.67 0.685901
Target:  5'- cGGCugCauccAGGccGUCGUGCGCCGCg -3'
miRNA:   3'- -UCGugGcuu-UUUuuCGGCGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 12995 0.68 0.605518
Target:  5'- cGGCGCUGGAcaacuGGCaaacCGCGCGCCu- -3'
miRNA:   3'- -UCGUGGCUUuuuu-UCG----GCGCGCGGug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.