miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26778 3' -53.2 NC_005808.1 + 18585 0.66 0.697256
Target:  5'- -uCGCUGAAuu--GGCCGaCGCGCCcACc -3'
miRNA:   3'- ucGUGGCUUuuuuUCGGC-GCGCGG-UG- -5'
26778 3' -53.2 NC_005808.1 + 20702 0.66 0.741856
Target:  5'- cAGCcCCGcAAugGAAGCCuugggcgacGUGCGCCAg -3'
miRNA:   3'- -UCGuGGC-UUuuUUUCGG---------CGCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 31896 0.66 0.719746
Target:  5'- aAGCaAUCGGcc-GAGGCCguGCGCGCUGCc -3'
miRNA:   3'- -UCG-UGGCUuuuUUUCGG--CGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 28271 0.66 0.741856
Target:  5'- aGGC-CCGgcAGuucagccAAGgCGCGCGCCAg -3'
miRNA:   3'- -UCGuGGCuuUUu------UUCgGCGCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 18685 0.66 0.697256
Target:  5'- cGCcuauGCCGGcauGGAAGCCGCggGCGUgGCg -3'
miRNA:   3'- uCG----UGGCUuu-UUUUCGGCG--CGCGgUG- -5'
26778 3' -53.2 NC_005808.1 + 42143 0.66 0.730855
Target:  5'- cAGCGcCCGcAAGcuGGCCGCGCagcaGCC-Ca -3'
miRNA:   3'- -UCGU-GGCuUUUuuUCGGCGCG----CGGuG- -5'
26778 3' -53.2 NC_005808.1 + 17291 0.66 0.741856
Target:  5'- gAGCGCCGGuggcAGGGCCG---GCCGCa -3'
miRNA:   3'- -UCGUGGCUuuu-UUUCGGCgcgCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 34457 0.66 0.701779
Target:  5'- cAGCGCCGAcacccgcacgcccacAAccaacgccGGCCGCGCGgUGCa -3'
miRNA:   3'- -UCGUGGCU---------------UUuuu-----UCGGCGCGCgGUG- -5'
26778 3' -53.2 NC_005808.1 + 295 0.66 0.741856
Target:  5'- uGCGCCGGAAGGcgcGCUcuuccguccaggGCGUGCCGu -3'
miRNA:   3'- uCGUGGCUUUUUuu-CGG------------CGCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 24201 0.66 0.697256
Target:  5'- -uCGCCGAcgu--GGCCGCcaccgGCGCCAUc -3'
miRNA:   3'- ucGUGGCUuuuuuUCGGCG-----CGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 8321 0.66 0.708542
Target:  5'- cGCGCUGcucGGGGAAAGuuGCGCGUg-- -3'
miRNA:   3'- uCGUGGC---UUUUUUUCggCGCGCGgug -5'
26778 3' -53.2 NC_005808.1 + 40327 0.66 0.701779
Target:  5'- cGGCACUGuacgcgaugaucgacAAGAAGauucauugcgcGGCCaCGCGCCGCc -3'
miRNA:   3'- -UCGUGGC---------------UUUUUU-----------UCGGcGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 10297 0.66 0.697256
Target:  5'- uGGCGgCGAu--GAGGUCGCGCaaCGCg -3'
miRNA:   3'- -UCGUgGCUuuuUUUCGGCGCGcgGUG- -5'
26778 3' -53.2 NC_005808.1 + 40483 0.66 0.730855
Target:  5'- uGCACgaUGAAuuGAAGCagcgucauuggGCGCGCUACa -3'
miRNA:   3'- uCGUG--GCUUuuUUUCGg----------CGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 6371 0.66 0.741856
Target:  5'- gGGCGCUGGguuacaccAGGucGGCCGCcGCGgCGCc -3'
miRNA:   3'- -UCGUGGCU--------UUUuuUCGGCG-CGCgGUG- -5'
26778 3' -53.2 NC_005808.1 + 31832 0.66 0.708542
Target:  5'- --gGCCGAAGAAcugcGGGCCgaagucgaGCGCGCCc- -3'
miRNA:   3'- ucgUGGCUUUUU----UUCGG--------CGCGCGGug -5'
26778 3' -53.2 NC_005808.1 + 15449 0.66 0.719746
Target:  5'- cGGCGCgUGggGGAcuucGAGUgaUGCGCGCgGCg -3'
miRNA:   3'- -UCGUG-GCuuUUU----UUCG--GCGCGCGgUG- -5'
26778 3' -53.2 NC_005808.1 + 33811 0.66 0.698387
Target:  5'- cGGCgcgGCCGAcccaucgugcGCCGCGUGCUGCc -3'
miRNA:   3'- -UCG---UGGCUuuuuuu----CGGCGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 29326 0.66 0.716394
Target:  5'- cGGCGCUGAAAGAcgccaaggauggcaAcuGGCUG-GCGCUACu -3'
miRNA:   3'- -UCGUGGCUUUUU--------------U--UCGGCgCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 35165 0.66 0.730855
Target:  5'- cGCGUCGAGGAAGuGuCCGgGCGCCcGCu -3'
miRNA:   3'- uCGUGGCUUUUUUuC-GGCgCGCGG-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.