miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26786 5' -60.6 NC_005808.1 + 16979 0.71 0.165648
Target:  5'- gCGCUGCuGG-CGAcCGCGCCGCCGuGg -3'
miRNA:   3'- -GCGGCGuCUaGCUcGUGCGGCGGCuC- -5'
26786 5' -60.6 NC_005808.1 + 33385 0.85 0.015776
Target:  5'- gCGCCGCAGAaCGuGCgccGCGCCGCCGAGc -3'
miRNA:   3'- -GCGGCGUCUaGCuCG---UGCGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 11165 0.83 0.025096
Target:  5'- aCGCCGCAGAUCGuGGCGuCGCCGuuGAu -3'
miRNA:   3'- -GCGGCGUCUAGC-UCGU-GCGGCggCUc -5'
26786 5' -60.6 NC_005808.1 + 42103 0.8 0.038681
Target:  5'- cCGCCGCGGcgC-AGUAUGCUGCCGAGg -3'
miRNA:   3'- -GCGGCGUCuaGcUCGUGCGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 33682 0.8 0.040967
Target:  5'- aCGCCcgaAGccAUCGAGCGCGCCGCCGAu -3'
miRNA:   3'- -GCGGcg-UC--UAGCUCGUGCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 39023 0.75 0.095862
Target:  5'- gGCCGCGGAUCGGuGUACGCCcaGCCc-- -3'
miRNA:   3'- gCGGCGUCUAGCU-CGUGCGG--CGGcuc -5'
26786 5' -60.6 NC_005808.1 + 14524 0.74 0.101628
Target:  5'- aCGCCGCGGccaccugcccgcuguUCGAGCAgacCGUCGCCGAc -3'
miRNA:   3'- -GCGGCGUCu--------------AGCUCGU---GCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 27764 0.74 0.116375
Target:  5'- gGCCGCcaacGGcAUCGAccugggcgaagGCAgCGCCGCCGAGg -3'
miRNA:   3'- gCGGCG----UC-UAGCU-----------CGU-GCGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 16895 0.74 0.116375
Target:  5'- cCGCCGCGGGgcugguaUGAGCAgCGuuGCCGAa -3'
miRNA:   3'- -GCGGCGUCUa------GCUCGU-GCggCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 33923 0.72 0.161272
Target:  5'- aCGCCG-AGGUCGcgcGGCACGCaauGCCGAc -3'
miRNA:   3'- -GCGGCgUCUAGC---UCGUGCGg--CGGCUc -5'
26786 5' -60.6 NC_005808.1 + 37844 0.66 0.405581
Target:  5'- aCGCCG-AGAacaUCGcGGC-CGUgGCCGAGa -3'
miRNA:   3'- -GCGGCgUCU---AGC-UCGuGCGgCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 18137 0.71 0.17472
Target:  5'- aGCaGCAGGUCGucGGCgucaAUGUCGCCGAGg -3'
miRNA:   3'- gCGgCGUCUAGC--UCG----UGCGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 19108 0.71 0.189158
Target:  5'- uGCCGCAGGUCGAGauucccacgGCGCaccuguuccaCGCCGGc -3'
miRNA:   3'- gCGGCGUCUAGCUCg--------UGCG----------GCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 5905 0.7 0.194199
Target:  5'- -aCCGCAGAUCGuccGGCAucuuuuCGCCGCUGGc -3'
miRNA:   3'- gcGGCGUCUAGC---UCGU------GCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 16792 0.7 0.199357
Target:  5'- cCGgUGCAGAUcaacgauacCGAGCGCGCCGCgCGc- -3'
miRNA:   3'- -GCgGCGUCUA---------GCUCGUGCGGCG-GCuc -5'
26786 5' -60.6 NC_005808.1 + 1943 0.7 0.221196
Target:  5'- uCGuCUGCGGGuucuggUCGAGCGCGCgGCCcuGGGg -3'
miRNA:   3'- -GC-GGCGUCU------AGCUCGUGCGgCGG--CUC- -5'
26786 5' -60.6 NC_005808.1 + 31847 0.69 0.251326
Target:  5'- gGCCGaa-GUCGAGCGCGCCcuuGgCGAGc -3'
miRNA:   3'- gCGGCgucUAGCUCGUGCGG---CgGCUC- -5'
26786 5' -60.6 NC_005808.1 + 9902 0.69 0.257743
Target:  5'- uGCaCGCGG--CGAGCACGUCGgCGAa -3'
miRNA:   3'- gCG-GCGUCuaGCUCGUGCGGCgGCUc -5'
26786 5' -60.6 NC_005808.1 + 33279 0.69 0.257743
Target:  5'- cCGCCGCGccGA-CGuGCGCcgccagGUCGCCGAGg -3'
miRNA:   3'- -GCGGCGU--CUaGCuCGUG------CGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 5317 0.68 0.2778
Target:  5'- gGCCGUAGGccgCGAGCACGUgGCg--- -3'
miRNA:   3'- gCGGCGUCUa--GCUCGUGCGgCGgcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.