miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26787 3' -59.5 NC_005808.1 + 41509 0.66 0.490077
Target:  5'- aCCGCCGCcaacAUGAaguACGcGCGCCGGGu -3'
miRNA:   3'- gGGCGGCGacc-UGCU---UGC-UGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 41120 0.7 0.284597
Target:  5'- gCCgGUgGC-GGAagaaGAACGGCGUCGAGg -3'
miRNA:   3'- -GGgCGgCGaCCUg---CUUGCUGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 40530 0.71 0.245152
Target:  5'- aUCGUggUGCUGGGCG-ACGACcCCGAGg -3'
miRNA:   3'- gGGCG--GCGACCUGCuUGCUGcGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 40291 0.69 0.31358
Target:  5'- gCCUGUCGCUGGACGcccGCGACuauuUCGAc -3'
miRNA:   3'- -GGGCGGCGACCUGCu--UGCUGc---GGCUc -5'
26787 3' -59.5 NC_005808.1 + 38897 0.68 0.344744
Target:  5'- -gCGCCGCaugGGGCaGcGCGuCGCCGGGu -3'
miRNA:   3'- ggGCGGCGa--CCUG-CuUGCuGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 37803 0.74 0.132652
Target:  5'- uCCCGCagcgccagccggcgUGCUGGGCGcagugugGGCGaACGCCGAGa -3'
miRNA:   3'- -GGGCG--------------GCGACCUGC-------UUGC-UGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 37723 0.66 0.47028
Target:  5'- gCCGCCgucgccgcGCUGGGC-AACGACcugaCCGGGc -3'
miRNA:   3'- gGGCGG--------CGACCUGcUUGCUGc---GGCUC- -5'
26787 3' -59.5 NC_005808.1 + 36861 0.72 0.204984
Target:  5'- gCCCgGCgCGCUGGGCGAucuguGCGACauccucaagguGCCGAc -3'
miRNA:   3'- -GGG-CG-GCGACCUGCU-----UGCUG-----------CGGCUc -5'
26787 3' -59.5 NC_005808.1 + 36434 0.66 0.47028
Target:  5'- aCCgGCCugcGCUGGGaagauGACGGCGgCGAGu -3'
miRNA:   3'- -GGgCGG---CGACCUgc---UUGCUGCgGCUC- -5'
26787 3' -59.5 NC_005808.1 + 35231 1.1 0.000284
Target:  5'- gCCCGCCGCUGGACGAACGACGCCGAGg -3'
miRNA:   3'- -GGGCGGCGACCUGCUUGCUGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 35197 0.67 0.413498
Target:  5'- gCCCgGCUucaaGCUGGugGAAgGuCGCCGcGg -3'
miRNA:   3'- -GGG-CGG----CGACCugCUUgCuGCGGCuC- -5'
26787 3' -59.5 NC_005808.1 + 34805 0.73 0.174753
Target:  5'- -gCGCCuGCUGGGCGgcgaaggGugGACGCCGGc -3'
miRNA:   3'- ggGCGG-CGACCUGC-------UugCUGCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 34666 0.66 0.441372
Target:  5'- gCCGUgGCgugaaGGugGACGCCGAGc -3'
miRNA:   3'- gGGCGgCGaccugCUugCUGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 33372 0.67 0.390238
Target:  5'- aCUGCCGCcGGGCGcgccgcagaacgugcGccGCGcCGCCGAGc -3'
miRNA:   3'- gGGCGGCGaCCUGC---------------U--UGCuGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 33277 0.74 0.134097
Target:  5'- gCCCGCCGCgccGACGuGCGccgccagguCGCCGAGg -3'
miRNA:   3'- -GGGCGGCGac-CUGCuUGCu--------GCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 32855 0.74 0.134097
Target:  5'- cCUgGCCGCa-GACGGuCGGCGCCGAGa -3'
miRNA:   3'- -GGgCGGCGacCUGCUuGCUGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 32346 0.7 0.264278
Target:  5'- aCCGCCGCccaGGucgcuGCGGuCGcCGCCGAGg -3'
miRNA:   3'- gGGCGGCGa--CC-----UGCUuGCuGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 32128 0.66 0.460534
Target:  5'- gCCGgUGCUGcGCGAcuuccaggGCGACGCCaAGg -3'
miRNA:   3'- gGGCgGCGACcUGCU--------UGCUGCGGcUC- -5'
26787 3' -59.5 NC_005808.1 + 32058 0.69 0.291639
Target:  5'- aCCCGuuGCgcgugGcGGCGGaaaGCGugGCCGGc -3'
miRNA:   3'- -GGGCggCGa----C-CUGCU---UGCugCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 31958 0.68 0.336749
Target:  5'- -aCGCCGCaGG-UGAAUGACGCCu-- -3'
miRNA:   3'- ggGCGGCGaCCuGCUUGCUGCGGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.