miRNA display CGI


Results 21 - 40 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26787 3' -59.5 NC_005808.1 + 31316 0.68 0.361141
Target:  5'- uUCCGCCuacCUGGcCGAGCGucccaGCGCCGcAGc -3'
miRNA:   3'- -GGGCGGc--GACCuGCUUGC-----UGCGGC-UC- -5'
26787 3' -59.5 NC_005808.1 + 30371 0.68 0.377213
Target:  5'- aCCCGCCGCUgcuguagGGugGGucggugauaACGGCGUCc-- -3'
miRNA:   3'- -GGGCGGCGA-------CCugCU---------UGCUGCGGcuc -5'
26787 3' -59.5 NC_005808.1 + 29958 0.74 0.134097
Target:  5'- aCCCGaCGCcaaaGGACGGcagcaGCGAUGCCGAGc -3'
miRNA:   3'- -GGGCgGCGa---CCUGCU-----UGCUGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 29176 0.74 0.144231
Target:  5'- gCCUGCCGUgGGACGAgaaccguuaccgcaACGAUGCCGc- -3'
miRNA:   3'- -GGGCGGCGaCCUGCU--------------UGCUGCGGCuc -5'
26787 3' -59.5 NC_005808.1 + 28281 0.67 0.413498
Target:  5'- aCCGCgCGCUGGGac-ACGGCGCaGAa -3'
miRNA:   3'- gGGCG-GCGACCUgcuUGCUGCGgCUc -5'
26787 3' -59.5 NC_005808.1 + 28056 0.66 0.47028
Target:  5'- uCUCGUCGCUGuuguccggcgccGGCG-ACGugGCUGAu -3'
miRNA:   3'- -GGGCGGCGAC------------CUGCuUGCugCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 27761 0.72 0.20873
Target:  5'- gCUgGCCGCcaacggcaucgaccUGGGCGAaggcaGCGcCGCCGAGg -3'
miRNA:   3'- -GGgCGGCG--------------ACCUGCU-----UGCuGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 26389 0.67 0.422669
Target:  5'- gCUGCUGCUcacgucuucGGGCGAAUGGCGCgUGGc -3'
miRNA:   3'- gGGCGGCGA---------CCUGCUUGCUGCG-GCUc -5'
26787 3' -59.5 NC_005808.1 + 25761 0.69 0.298817
Target:  5'- gCgCGCUGCUGGGCGGcggcaACGAUgGCCGcGa -3'
miRNA:   3'- -GgGCGGCGACCUGCU-----UGCUG-CGGCuC- -5'
26787 3' -59.5 NC_005808.1 + 25662 0.7 0.266918
Target:  5'- -aCGCUGCUGGACGGcgccgugcccuACGAaaucgccaaucccuaCGCCGAa -3'
miRNA:   3'- ggGCGGCGACCUGCU-----------UGCU---------------GCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 24675 0.66 0.460534
Target:  5'- gCCCGCCGC-GGGCc-ACGuccACGCCcAGg -3'
miRNA:   3'- -GGGCGGCGaCCUGcuUGC---UGCGGcUC- -5'
26787 3' -59.5 NC_005808.1 + 24442 0.66 0.441372
Target:  5'- gCCGCgCGCggccucGGCGAcauUGACGCCGAc -3'
miRNA:   3'- gGGCG-GCGac----CUGCUu--GCUGCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 23321 0.68 0.336749
Target:  5'- aCCaCGCUGUUcuacGGCGAuuccagcauCGACGCCGAGa -3'
miRNA:   3'- -GG-GCGGCGAc---CUGCUu--------GCUGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 22320 0.72 0.199735
Target:  5'- -aUGCUGCUGGccgugcCGAACG-CGCCGAGu -3'
miRNA:   3'- ggGCGGCGACCu-----GCUUGCuGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 21999 0.68 0.344744
Target:  5'- -aCGCCGcCUGG-CGAAgGAUaCCGAGg -3'
miRNA:   3'- ggGCGGC-GACCuGCUUgCUGcGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 21317 0.72 0.199735
Target:  5'- gCCGaCCGCUGGGCcGACacuuACGCCGAc -3'
miRNA:   3'- gGGC-GGCGACCUGcUUGc---UGCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 21159 0.67 0.404451
Target:  5'- cCCCGCCGCaGGAaaugcaGGGCGuugaccugaACGUgGAGu -3'
miRNA:   3'- -GGGCGGCGaCCUg-----CUUGC---------UGCGgCUC- -5'
26787 3' -59.5 NC_005808.1 + 19491 0.67 0.431961
Target:  5'- aCCGCUGUcgccgUGGGCGccgccguUGGCGUCGGGg -3'
miRNA:   3'- gGGCGGCG-----ACCUGCuu-----GCUGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 18432 0.67 0.404451
Target:  5'- gUCCGCCGagucCUGcaccgaaaacguGACGGucGCGGCGCCGGc -3'
miRNA:   3'- -GGGCGGC----GAC------------CUGCU--UGCUGCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 17893 0.67 0.413498
Target:  5'- gCCCGaCCGaCUGGcacCGAugGACaGCCuGGGc -3'
miRNA:   3'- -GGGC-GGC-GACCu--GCUugCUG-CGG-CUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.