miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26792 3' -51.7 NC_005808.1 + 5826 0.66 0.838041
Target:  5'- gGCAuGGCGugccGCAGCaccgUGCGGUcgaaguggcuauuguGGGCGCa -3'
miRNA:   3'- gCGU-CCGUu---UGUUG----AUGCCG---------------UUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 14090 0.66 0.834315
Target:  5'- gCGCcGGCAGAUGACcgaguuCGGCAaugccgAGCGg -3'
miRNA:   3'- -GCGuCCGUUUGUUGau----GCCGU------UCGCg -5'
26792 3' -51.7 NC_005808.1 + 17300 0.66 0.834315
Target:  5'- cCGCGGGCGcGCAuccAUUcCGGCAuauGgGCc -3'
miRNA:   3'- -GCGUCCGUuUGU---UGAuGCCGUu--CgCG- -5'
26792 3' -51.7 NC_005808.1 + 37644 0.66 0.834315
Target:  5'- aGCAGcGCGAuacGCGGCUGCaucguGGCGcccgAGgGCa -3'
miRNA:   3'- gCGUC-CGUU---UGUUGAUG-----CCGU----UCgCG- -5'
26792 3' -51.7 NC_005808.1 + 30965 0.66 0.834315
Target:  5'- aGCuGGCGGACuACUuCGGCGugacGGUGg -3'
miRNA:   3'- gCGuCCGUUUGuUGAuGCCGU----UCGCg -5'
26792 3' -51.7 NC_005808.1 + 17266 0.66 0.834315
Target:  5'- gGCcGGCcuGGACAAUccCGGCGacgAGCGCc -3'
miRNA:   3'- gCGuCCG--UUUGUUGauGCCGU---UCGCG- -5'
26792 3' -51.7 NC_005808.1 + 14431 0.66 0.831495
Target:  5'- gCGUGGGC-AACGGCgUGgucgaucugaccacCGGCAAGCuGCu -3'
miRNA:   3'- -GCGUCCGuUUGUUG-AU--------------GCCGUUCG-CG- -5'
26792 3' -51.7 NC_005808.1 + 10376 0.66 0.824835
Target:  5'- gCGguGGUGGugAGuu-CGGaCAGGCGCg -3'
miRNA:   3'- -GCguCCGUUugUUgauGCC-GUUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 813 0.66 0.824835
Target:  5'- aGCAGGU----GGCUG-GGCuuGAGCGCg -3'
miRNA:   3'- gCGUCCGuuugUUGAUgCCG--UUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 20678 0.66 0.824835
Target:  5'- gGUcGGCGguGACAuCUACGGCAacAGCcccGCa -3'
miRNA:   3'- gCGuCCGU--UUGUuGAUGCCGU--UCG---CG- -5'
26792 3' -51.7 NC_005808.1 + 19233 0.66 0.824835
Target:  5'- aGCGGGCAcGCcACcguguucaucgGCGGCGAggccgucgaauuGCGCg -3'
miRNA:   3'- gCGUCCGUuUGuUGa----------UGCCGUU------------CGCG- -5'
26792 3' -51.7 NC_005808.1 + 37983 0.66 0.823875
Target:  5'- gCGCGGGCcAACAuuggccugGCUgaccuggGCGGCAu-CGCa -3'
miRNA:   3'- -GCGUCCGuUUGU--------UGA-------UGCCGUucGCG- -5'
26792 3' -51.7 NC_005808.1 + 34028 0.66 0.82098
Target:  5'- aCGCGcGGCcuACGACgcccaggaugaGGuCGAGCGCg -3'
miRNA:   3'- -GCGU-CCGuuUGUUGaug--------CC-GUUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 26577 0.66 0.815132
Target:  5'- gGCAGGCcAACggUUucgucacCGGCGAccugucccuGCGCg -3'
miRNA:   3'- gCGUCCGuUUGuuGAu------GCCGUU---------CGCG- -5'
26792 3' -51.7 NC_005808.1 + 8580 0.66 0.815132
Target:  5'- uCGUAGGCc-GCGcgUGCGGCcuGGUGCu -3'
miRNA:   3'- -GCGUCCGuuUGUugAUGCCGu-UCGCG- -5'
26792 3' -51.7 NC_005808.1 + 23925 0.66 0.815132
Target:  5'- uGCcGGCAua-GGCgugAUGGuCAGGCGCc -3'
miRNA:   3'- gCGuCCGUuugUUGa--UGCC-GUUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 30424 0.66 0.815132
Target:  5'- gGCAuGGCGAugAGCgcgGGCAGG-GCc -3'
miRNA:   3'- gCGU-CCGUUugUUGaugCCGUUCgCG- -5'
26792 3' -51.7 NC_005808.1 + 19978 0.66 0.809207
Target:  5'- gGCAGGCcgccgauguccgcguAGAacucgcCAACUugcuCGGCAuGGCGCg -3'
miRNA:   3'- gCGUCCG---------------UUU------GUUGAu---GCCGU-UCGCG- -5'
26792 3' -51.7 NC_005808.1 + 30685 0.66 0.805216
Target:  5'- gGCAcGGCGGugAAgUAUcuGGUcAGCGCa -3'
miRNA:   3'- gCGU-CCGUUugUUgAUG--CCGuUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 3800 0.66 0.805216
Target:  5'- gGuCGGGCAGcAUGACcagGCGGUcggGGGCGCc -3'
miRNA:   3'- gC-GUCCGUU-UGUUGa--UGCCG---UUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.