Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26792 | 5' | -60 | NC_005808.1 | + | 21397 | 0.66 | 0.418293 |
Target: 5'- uGGGCCUGCGCGaGCaUGgAaacgaacuccacGUUcaggucaacgcCCUGCa -3' miRNA: 3'- -CCCGGACGCGC-CGcACgU------------CAA-----------GGACG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 13459 | 0.66 | 0.40903 |
Target: 5'- cGGCCUcggGCGCGGUGU-CGGgcaugaCCUGg -3' miRNA: 3'- cCCGGA---CGCGCCGCAcGUCaa----GGACg -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 10886 | 0.66 | 0.399896 |
Target: 5'- -aGCCcgcGCGCGGCGggcuggucagGCGGUg-CUGCa -3' miRNA: 3'- ccCGGa--CGCGCCGCa---------CGUCAagGACG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 34876 | 0.66 | 0.399896 |
Target: 5'- cGGCCgccgaGCGUGcGC-UGCAGUUCaucgGCa -3' miRNA: 3'- cCCGGa----CGCGC-CGcACGUCAAGga--CG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 7254 | 0.66 | 0.399896 |
Target: 5'- cGGGCCgaUGuCGcCGGCcuuGUGCAGcUUCUcgGCg -3' miRNA: 3'- -CCCGG--AC-GC-GCCG---CACGUC-AAGGa-CG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 17745 | 0.66 | 0.390894 |
Target: 5'- uGGUg-GCGaaaccccaGGUGUGCAGUUCgaGCa -3' miRNA: 3'- cCCGgaCGCg-------CCGCACGUCAAGgaCG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 15378 | 0.66 | 0.382025 |
Target: 5'- cGGUgaGCGCGuccGCGUGCGGg-CCgGCg -3' miRNA: 3'- cCCGgaCGCGC---CGCACGUCaaGGaCG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 25829 | 0.66 | 0.373291 |
Target: 5'- cGGGCCgccguugGCGcCGGU---CAGUUCCaUGCu -3' miRNA: 3'- -CCCGGa------CGC-GCCGcacGUCAAGG-ACG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 38931 | 0.67 | 0.356234 |
Target: 5'- gGGGCgUUGUGCaGGCGUcCGGUUgCUUGUg -3' miRNA: 3'- -CCCG-GACGCG-CCGCAcGUCAA-GGACG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 1882 | 0.67 | 0.347914 |
Target: 5'- uGGCCgGCGCuggccgggugGGCGaacaGCAGcgggauuuUUCCUGCg -3' miRNA: 3'- cCCGGaCGCG----------CCGCa---CGUC--------AAGGACG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 18294 | 0.67 | 0.347914 |
Target: 5'- cGGGCCggugGCGaCGGUGUaauagacacgGCAGUagCgGCg -3' miRNA: 3'- -CCCGGa---CGC-GCCGCA----------CGUCAagGaCG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 28402 | 0.67 | 0.347914 |
Target: 5'- -cGCCggcgGCGCGGCGccaGUAGaugCCUGUc -3' miRNA: 3'- ccCGGa---CGCGCCGCa--CGUCaa-GGACG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 10239 | 0.67 | 0.339733 |
Target: 5'- gGGGCCUcgGCGGCGaccGCAGcgaCCUGg -3' miRNA: 3'- -CCCGGAcgCGCCGCa--CGUCaa-GGACg -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 13479 | 0.67 | 0.323793 |
Target: 5'- cGGCCUcGCGCGcGUGaccgGCAGcaagUCCcGCa -3' miRNA: 3'- cCCGGA-CGCGC-CGCa---CGUCa---AGGaCG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 448 | 0.67 | 0.323793 |
Target: 5'- uGGGCUgcUGCGCGGCcagcuUGCGGgcgCUGUc -3' miRNA: 3'- -CCCGG--ACGCGCCGc----ACGUCaagGACG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 26046 | 0.68 | 0.308416 |
Target: 5'- -aGCCcGCGCGGCGgGCGcGcUCCaUGCg -3' miRNA: 3'- ccCGGaCGCGCCGCaCGU-CaAGG-ACG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 938 | 0.68 | 0.292878 |
Target: 5'- gGGGCCgaucuguccguccUGCGCGGUGcccacgGCAG--CUUGCa -3' miRNA: 3'- -CCCGG-------------ACGCGCCGCa-----CGUCaaGGACG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 14811 | 0.68 | 0.286408 |
Target: 5'- cGG-CUGCGCGGCGcGCGcUUCgUGUa -3' miRNA: 3'- cCCgGACGCGCCGCaCGUcAAGgACG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 21179 | 0.69 | 0.259015 |
Target: 5'- cGGCCugcUGCGCGGCcUGCuGcuggUCUGCg -3' miRNA: 3'- cCCGG---ACGCGCCGcACGuCaa--GGACG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 18055 | 0.69 | 0.259015 |
Target: 5'- gGGGCCUuaccgGCGCGGgGUGCGugcuGggCC-GCc -3' miRNA: 3'- -CCCGGA-----CGCGCCgCACGU----CaaGGaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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