miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26796 3' -52.5 NC_005808.1 + 42171 0.7 0.592795
Target:  5'- aGCACUaaGACCAacguGGCCcgCGACGugCu -3'
miRNA:   3'- -CGUGGagCUGGU----CUGGuaGUUGCugG- -5'
26796 3' -52.5 NC_005808.1 + 41995 0.69 0.660398
Target:  5'- cGCugCU-GGCC-GACCcgCAGgCGGCCa -3'
miRNA:   3'- -CGugGAgCUGGuCUGGuaGUU-GCUGG- -5'
26796 3' -52.5 NC_005808.1 + 41979 0.68 0.682827
Target:  5'- cGCGCCgaGGCUgAGGCCAUCAucgcCGACa -3'
miRNA:   3'- -CGUGGagCUGG-UCUGGUAGUu---GCUGg -5'
26796 3' -52.5 NC_005808.1 + 41914 0.77 0.264405
Target:  5'- gGCGCC-CGGCCGGcgccGCCGUaGGCGGCCu -3'
miRNA:   3'- -CGUGGaGCUGGUC----UGGUAgUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 41279 0.71 0.537308
Target:  5'- cGCGCUugUCGGCCugguGGCCGUCGcccugggcGCGGCg -3'
miRNA:   3'- -CGUGG--AGCUGGu---CUGGUAGU--------UGCUGg -5'
26796 3' -52.5 NC_005808.1 + 41003 0.71 0.537308
Target:  5'- aCGCaCUCGACC--ACCAggaaggCGGCGGCCa -3'
miRNA:   3'- cGUG-GAGCUGGucUGGUa-----GUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 40840 0.69 0.626574
Target:  5'- cGCGCCa-GGCgCAGGCCggCcAUGACCg -3'
miRNA:   3'- -CGUGGagCUG-GUCUGGuaGuUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 40653 0.79 0.196787
Target:  5'- cGCGCgCUCGACCAGAaCCcgCAgACGAUCc -3'
miRNA:   3'- -CGUG-GAGCUGGUCU-GGuaGU-UGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 40173 0.68 0.725891
Target:  5'- gGCGCCuucaaaUCGAggugguuCCAGuCCAUCcagguaggcAGCGACCg -3'
miRNA:   3'- -CGUGG------AGCU-------GGUCuGGUAG---------UUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 39790 0.67 0.748507
Target:  5'- aGCACCU-GGCCcGACgaAUCGACGAa- -3'
miRNA:   3'- -CGUGGAgCUGGuCUGg-UAGUUGCUgg -5'
26796 3' -52.5 NC_005808.1 + 38434 0.69 0.637858
Target:  5'- aCACCUCGACCAcGGCgCgcaagGUgGGCGGCUu -3'
miRNA:   3'- cGUGGAGCUGGU-CUG-G-----UAgUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 38404 0.67 0.759091
Target:  5'- cGUGCUcgCGGCCAacaugcccGCCAUCGagGCGGCCg -3'
miRNA:   3'- -CGUGGa-GCUGGUc-------UGGUAGU--UGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 38317 0.67 0.766419
Target:  5'- uCACCgcCGACaCGG-CCAUCAccaugccggcgcugACGGCCg -3'
miRNA:   3'- cGUGGa-GCUG-GUCuGGUAGU--------------UGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 38247 0.67 0.788968
Target:  5'- cGCACCggcaacgcaaCGGCCAGcaucaaggcuggcACCAUCGugGAg- -3'
miRNA:   3'- -CGUGGa---------GCUGGUC-------------UGGUAGUugCUgg -5'
26796 3' -52.5 NC_005808.1 + 38040 0.68 0.716059
Target:  5'- aGCGCCUCGGCgAcuucGGCC-UCAAgcccaaGACCu -3'
miRNA:   3'- -CGUGGAGCUGgU----CUGGuAGUUg-----CUGG- -5'
26796 3' -52.5 NC_005808.1 + 37734 0.66 0.819304
Target:  5'- cGCGCUgggcaaCGACCuGACCgggcaaccuaugGUCAucgacuacgGCGACCu -3'
miRNA:   3'- -CGUGGa-----GCUGGuCUGG------------UAGU---------UGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 37657 0.66 0.809719
Target:  5'- -aACCUcgcagaCGugCAGACCGUC-GCGGgCa -3'
miRNA:   3'- cgUGGA------GCugGUCUGGUAGuUGCUgG- -5'
26796 3' -52.5 NC_005808.1 + 37302 0.66 0.809719
Target:  5'- -gGCCUCGaccuGCCAGACaugcagcaAUCGACG-CUg -3'
miRNA:   3'- cgUGGAGC----UGGUCUGg-------UAGUUGCuGG- -5'
26796 3' -52.5 NC_005808.1 + 37117 1.15 0.000625
Target:  5'- gGCACCUCGACCAGACCAUCAACGACCg -3'
miRNA:   3'- -CGUGGAGCUGGUCUGGUAGUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 36975 0.68 0.726979
Target:  5'- cCACCUCG-CCAa--CAUCGACG-CCg -3'
miRNA:   3'- cGUGGAGCuGGUcugGUAGUUGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.