Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26801 | 5' | -62.8 | NC_005808.1 | + | 22235 | 0.7 | 0.149522 |
Target: 5'- gCGGC-CCUGGUUgucggccgcgaugGCGUAUUCGCCgGCc -3' miRNA: 3'- -GCCGcGGACCGA-------------CGCGUAGGCGGaCG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 17513 | 0.69 | 0.158184 |
Target: 5'- aCGGCGCCgGGC-GCGC-UgCGCUgggugGCg -3' miRNA: 3'- -GCCGCGGaCCGaCGCGuAgGCGGa----CG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 24161 | 0.69 | 0.158184 |
Target: 5'- -aGCGCCUcgacGGCUGCGCGcuUCgGCgUGUc -3' miRNA: 3'- gcCGCGGA----CCGACGCGU--AGgCGgACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 15360 | 0.69 | 0.158184 |
Target: 5'- aCGuGCGCUgcuucaccucGGUgaGCGCGUCCGCgUGCg -3' miRNA: 3'- -GC-CGCGGa---------CCGa-CGCGUAGGCGgACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 8385 | 0.69 | 0.166854 |
Target: 5'- cCGGCcucGCgCUGGCUGCGUagccaGUCgGCCaggGCc -3' miRNA: 3'- -GCCG---CG-GACCGACGCG-----UAGgCGGa--CG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 8157 | 0.69 | 0.171346 |
Target: 5'- uCGGCGCUgcguccCUGCGCGUgCGCCcggaUGCu -3' miRNA: 3'- -GCCGCGGacc---GACGCGUAgGCGG----ACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 38746 | 0.69 | 0.171801 |
Target: 5'- aCGGCGCCUGGUacaacuucgccgagGUcaugacucaccacgGCAagCGCCUGCc -3' miRNA: 3'- -GCCGCGGACCGa-------------CG--------------CGUagGCGGACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 33915 | 0.69 | 0.180656 |
Target: 5'- gCGGCGCacaccugGGC-GCGCAgcagCCG-CUGCa -3' miRNA: 3'- -GCCGCGga-----CCGaCGCGUa---GGCgGACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 13016 | 0.68 | 0.185477 |
Target: 5'- cCGcGCGCCUGG--GCGCggCCGaCCUGa -3' miRNA: 3'- -GC-CGCGGACCgaCGCGuaGGC-GGACg -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 13792 | 0.68 | 0.188919 |
Target: 5'- aCGGCGCgCUGGCUGCucaagaucgGCAaCCagggcaagcgcgacGCCgUGCg -3' miRNA: 3'- -GCCGCG-GACCGACG---------CGUaGG--------------CGG-ACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 27418 | 0.68 | 0.195461 |
Target: 5'- uCGcGCGCCUGGCgcaccGCGCccggCgGCCgcagGCc -3' miRNA: 3'- -GC-CGCGGACCGa----CGCGua--GgCGGa---CG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 3700 | 0.68 | 0.195461 |
Target: 5'- aCGGCGacgcgCUGccccauGCgGCGCAUCCGCUcaUGCu -3' miRNA: 3'- -GCCGCg----GAC------CGaCGCGUAGGCGG--ACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 22995 | 0.68 | 0.200627 |
Target: 5'- uCGGCuuucGCCUGGUcggccUGCuGC-UgCGCCUGCu -3' miRNA: 3'- -GCCG----CGGACCG-----ACG-CGuAgGCGGACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 14360 | 0.68 | 0.200627 |
Target: 5'- gCGGUGuCCUGGaaggcggGgGCAUCCGCgCcGCg -3' miRNA: 3'- -GCCGC-GGACCga-----CgCGUAGGCG-GaCG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 27451 | 0.68 | 0.205911 |
Target: 5'- cCGuCGcCCUGG--GCGCAUCCGCCgccaGCa -3' miRNA: 3'- -GCcGC-GGACCgaCGCGUAGGCGGa---CG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 27743 | 0.68 | 0.211316 |
Target: 5'- aGGCGCCcagcGuGCgGCGCuggCCGCCaacgGCa -3' miRNA: 3'- gCCGCGGa---C-CGaCGCGua-GGCGGa---CG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 1647 | 0.68 | 0.211316 |
Target: 5'- uCGGgGUa-GGuCUGCGCGUCCuGUUUGCg -3' miRNA: 3'- -GCCgCGgaCC-GACGCGUAGG-CGGACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 18455 | 0.67 | 0.216841 |
Target: 5'- aGGCGCUgGGCcagGCGCGcagCCGgCUGg -3' miRNA: 3'- gCCGCGGaCCGa--CGCGUa--GGCgGACg -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 39071 | 0.67 | 0.216841 |
Target: 5'- gCGGUGUgcGGCUGUaugucuauaaGUGUCCGCaCUGCa -3' miRNA: 3'- -GCCGCGgaCCGACG----------CGUAGGCG-GACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 2243 | 0.67 | 0.216841 |
Target: 5'- gCGGCGCgUGGCcGCGCAaugaaUCUuCUUGUc -3' miRNA: 3'- -GCCGCGgACCGaCGCGU-----AGGcGGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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