Results 1 - 20 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26810 | 5' | -53.9 | NC_005808.1 | + | 32384 | 0.66 | 0.725233 |
Target: 5'- gGCCGCCcagcaggaaGCCAGCAccGAaaaaaAGccGCGCGCc -3' miRNA: 3'- aUGGCGG---------CGGUUGUa-CU-----UCa-UGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 15569 | 0.66 | 0.725233 |
Target: 5'- aUGgCGCCGUCA--GUGAcg-ACGCGCu -3' miRNA: 3'- -AUgGCGGCGGUugUACUucaUGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 37808 | 0.66 | 0.725233 |
Target: 5'- cAgCGCCaGCCGGCGUGc--UGgGCGCa -3' miRNA: 3'- aUgGCGG-CGGUUGUACuucAUgCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 8055 | 0.66 | 0.725233 |
Target: 5'- aACCGCUGCuCGACcaucAGUucaccgcccaagGCGCGCa -3' miRNA: 3'- aUGGCGGCG-GUUGuacuUCA------------UGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 18959 | 0.66 | 0.725233 |
Target: 5'- cUGCCGCCGCCGGC------UAC-CGCg -3' miRNA: 3'- -AUGGCGGCGGUUGuacuucAUGcGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 27760 | 0.66 | 0.718622 |
Target: 5'- cGCUgGCCGCCAACGgcaucgaccugggcGAAGgcaGCGCc -3' miRNA: 3'- aUGG-CGGCGGUUGUa-------------CUUCaugCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 40205 | 0.66 | 0.714196 |
Target: 5'- uUGCCGCC-CUGACAa-GGGUACGCacGCg -3' miRNA: 3'- -AUGGCGGcGGUUGUacUUCAUGCG--CG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 18046 | 0.66 | 0.714196 |
Target: 5'- gGCUGCUuggggGCCuuaccGGCGcGggGUGCGUGCu -3' miRNA: 3'- aUGGCGG-----CGG-----UUGUaCuuCAUGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 8120 | 0.66 | 0.714196 |
Target: 5'- cACCGCgCgGCCGGCGUu-GGUuguggGCGUGCg -3' miRNA: 3'- aUGGCG-G-CGGUUGUAcuUCA-----UGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 20363 | 0.66 | 0.714196 |
Target: 5'- cAUCGCgGCCGACAaccAGGgcCGCGUc -3' miRNA: 3'- aUGGCGgCGGUUGUac-UUCauGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 40447 | 0.66 | 0.714196 |
Target: 5'- --aUGCCGCCAGCAaGAccauaaAGUGCcUGCa -3' miRNA: 3'- augGCGGCGGUUGUaCU------UCAUGcGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 35059 | 0.66 | 0.714196 |
Target: 5'- gGCCGCgaGCCAGCGUGcGGaagaacacUcggacgccgaaaGCGCGCg -3' miRNA: 3'- aUGGCGg-CGGUUGUACuUC--------A------------UGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 19635 | 0.66 | 0.714196 |
Target: 5'- gGCCGCgacaucgGCCAGCGUcGGGUugGUGg -3' miRNA: 3'- aUGGCGg------CGGUUGUAcUUCAugCGCg -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 38569 | 0.66 | 0.703072 |
Target: 5'- cGCCGCgGCCGGCuuUGAAGccuauCGCu- -3' miRNA: 3'- aUGGCGgCGGUUGu-ACUUCau---GCGcg -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 10543 | 0.66 | 0.703072 |
Target: 5'- -uCCGCCGCCAcgcGCAacGGGUAUugcuggaacaGCGCc -3' miRNA: 3'- auGGCGGCGGU---UGUacUUCAUG----------CGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 15016 | 0.66 | 0.703072 |
Target: 5'- cUGgCGCCGCCugcuGCcgGugcccuuUACGCGCa -3' miRNA: 3'- -AUgGCGGCGGu---UGuaCuuc----AUGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 6415 | 0.66 | 0.703072 |
Target: 5'- -gUCGCgGCC--CAUGucGUugGCGCc -3' miRNA: 3'- auGGCGgCGGuuGUACuuCAugCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 33698 | 0.66 | 0.701955 |
Target: 5'- aGCgCGCCGCCGAUagcgccauucacaAUGAugccCGCGCc -3' miRNA: 3'- aUG-GCGGCGGUUG-------------UACUucauGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 28783 | 0.66 | 0.691874 |
Target: 5'- -uCCGCCGaguGGCAgGAGGcacagGCGCGCa -3' miRNA: 3'- auGGCGGCgg-UUGUaCUUCa----UGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 5890 | 0.66 | 0.680614 |
Target: 5'- gGCauagGUCGCCAGCGUGGugaguGUGC-CGCc -3' miRNA: 3'- aUGg---CGGCGGUUGUACUu----CAUGcGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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