miRNA display CGI


Results 1 - 20 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26810 5' -53.9 NC_005808.1 + 42287 0.67 0.612428
Target:  5'- gUACgGCaCGCCcugGACG-GAAGaGCGCGCc -3'
miRNA:   3'- -AUGgCG-GCGG---UUGUaCUUCaUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 41566 0.69 0.510867
Target:  5'- aUGCUGCCGCCGGcCGUGGccuuccaGGUguucgACGCuGCg -3'
miRNA:   3'- -AUGGCGGCGGUU-GUACU-------UCA-----UGCG-CG- -5'
26810 5' -53.9 NC_005808.1 + 41507 1.11 0.000676
Target:  5'- cUACCGCCGCCAACAUGAAGUACGCGCg -3'
miRNA:   3'- -AUGGCGGCGGUUGUACUUCAUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 41454 0.7 0.473591
Target:  5'- gACCGCCGCCGuaGCGcGAgcuaacgguuacaccGGgccgAUGCGCg -3'
miRNA:   3'- aUGGCGGCGGU--UGUaCU---------------UCa---UGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 40447 0.66 0.714196
Target:  5'- --aUGCCGCCAGCAaGAccauaaAGUGCcUGCa -3'
miRNA:   3'- augGCGGCGGUUGUaCU------UCAUGcGCG- -5'
26810 5' -53.9 NC_005808.1 + 40441 0.68 0.578434
Target:  5'- aACUGuUCGCCAACGUGuacgGCgGCGCg -3'
miRNA:   3'- aUGGC-GGCGGUUGUACuucaUG-CGCG- -5'
26810 5' -53.9 NC_005808.1 + 40205 0.66 0.714196
Target:  5'- uUGCCGCC-CUGACAa-GGGUACGCacGCg -3'
miRNA:   3'- -AUGGCGGcGGUUGUacUUCAUGCG--CG- -5'
26810 5' -53.9 NC_005808.1 + 38978 0.68 0.555992
Target:  5'- uUACCaCCGCCAGC--GAAGcaaaAUGCGCg -3'
miRNA:   3'- -AUGGcGGCGGUUGuaCUUCa---UGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 38861 0.69 0.544865
Target:  5'- gUGCCGCCcucaucaaauccGCgAGCAUGAGcggAUGCGCc -3'
miRNA:   3'- -AUGGCGG------------CGgUUGUACUUca-UGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 38569 0.66 0.703072
Target:  5'- cGCCGCgGCCGGCuuUGAAGccuauCGCu- -3'
miRNA:   3'- aUGGCGgCGGUUGu-ACUUCau---GCGcg -5'
26810 5' -53.9 NC_005808.1 + 38360 0.68 0.601065
Target:  5'- cACCGacuaCGCCAucuacgucugcgACgAUGGcacGGUGCGCGCc -3'
miRNA:   3'- aUGGCg---GCGGU------------UG-UACU---UCAUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 37808 0.66 0.725233
Target:  5'- cAgCGCCaGCCGGCGUGc--UGgGCGCa -3'
miRNA:   3'- aUgGCGG-CGGUUGUACuucAUgCGCG- -5'
26810 5' -53.9 NC_005808.1 + 37174 0.67 0.635199
Target:  5'- --aCGCCGCCAuccgcgcCGUGGAgcGUACGCa- -3'
miRNA:   3'- augGCGGCGGUu------GUACUU--CAUGCGcg -5'
26810 5' -53.9 NC_005808.1 + 37075 0.67 0.612428
Target:  5'- aGCUGCCgGCCuggaacuaccaaGGCAccGAGUugGCGCu -3'
miRNA:   3'- aUGGCGG-CGG------------UUGUacUUCAugCGCG- -5'
26810 5' -53.9 NC_005808.1 + 37002 0.68 0.578434
Target:  5'- cACC-CCGCCGAgugggccaaauuCGUGGAGUAUGCcgGCc -3'
miRNA:   3'- aUGGcGGCGGUU------------GUACUUCAUGCG--CG- -5'
26810 5' -53.9 NC_005808.1 + 36497 0.67 0.635199
Target:  5'- cACCGuuG-CGACAUGcgcAAGgcCGCGCu -3'
miRNA:   3'- aUGGCggCgGUUGUAC---UUCauGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 36056 0.69 0.544865
Target:  5'- gGCUGCuacgucaaCGCCAGCAUcGAAcuGUGgGCGCa -3'
miRNA:   3'- aUGGCG--------GCGGUUGUA-CUU--CAUgCGCG- -5'
26810 5' -53.9 NC_005808.1 + 35531 0.67 0.657958
Target:  5'- gGCCGCgGCgu-CAUGAAGUACcuggcCGCc -3'
miRNA:   3'- aUGGCGgCGguuGUACUUCAUGc----GCG- -5'
26810 5' -53.9 NC_005808.1 + 35234 0.67 0.646586
Target:  5'- cGCCGCuggacgaacgaCGCCGAgGUcGAGgcCGCGCu -3'
miRNA:   3'- aUGGCG-----------GCGGUUgUAcUUCauGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 35059 0.66 0.714196
Target:  5'- gGCCGCgaGCCAGCGUGcGGaagaacacUcggacgccgaaaGCGCGCg -3'
miRNA:   3'- aUGGCGg-CGGUUGUACuUC--------A------------UGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.