miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26810 5' -53.9 NC_005808.1 + 35014 0.66 0.668171
Target:  5'- cACCGUCGCCGACgacuucGUGGAcGUguccaagccggugGCGcCGCa -3'
miRNA:   3'- aUGGCGGCGGUUG------UACUU-CA-------------UGC-GCG- -5'
26810 5' -53.9 NC_005808.1 + 34857 0.66 0.673833
Target:  5'- -uUCGUCGCCAACAgcaagccggccgccGAGcGUGCGCuGCa -3'
miRNA:   3'- auGGCGGCGGUUGUa-------------CUU-CAUGCG-CG- -5'
26810 5' -53.9 NC_005808.1 + 34421 0.71 0.399675
Target:  5'- aAUCGCCGgCAGCAUccGGgcgcACGCGCa -3'
miRNA:   3'- aUGGCGGCgGUUGUAcuUCa---UGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 34382 0.72 0.336916
Target:  5'- gGCCGCCGaCCAGCGcGAcuacgAGgcCGUGCg -3'
miRNA:   3'- aUGGCGGC-GGUUGUaCU-----UCauGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 34022 0.67 0.643171
Target:  5'- gGCCGCaCGCgCGGCcuacgacgcccaggAUGAGGUcgaGCGCg -3'
miRNA:   3'- aUGGCG-GCG-GUUG--------------UACUUCAug-CGCG- -5'
26810 5' -53.9 NC_005808.1 + 33939 0.71 0.418929
Target:  5'- aGCCGCUGCacACAgcGAGUACgGCGCg -3'
miRNA:   3'- aUGGCGGCGguUGUacUUCAUG-CGCG- -5'
26810 5' -53.9 NC_005808.1 + 33832 0.68 0.567185
Target:  5'- cGCCGCgUGCUGcccgaagcggcACGUGAA-UACGCGCg -3'
miRNA:   3'- aUGGCG-GCGGU-----------UGUACUUcAUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 33698 0.66 0.701955
Target:  5'- aGCgCGCCGCCGAUagcgccauucacaAUGAugccCGCGCc -3'
miRNA:   3'- aUG-GCGGCGGUUG-------------UACUucauGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 33371 0.72 0.371878
Target:  5'- aACUGCCGCCGggcgcgccGCA-GAAcGUGCGcCGCg -3'
miRNA:   3'- aUGGCGGCGGU--------UGUaCUU-CAUGC-GCG- -5'
26810 5' -53.9 NC_005808.1 + 33269 0.72 0.371878
Target:  5'- aUGCCGCCGCCcgccGCGccGAcGUGCGcCGCc -3'
miRNA:   3'- -AUGGCGGCGGu---UGUa-CUuCAUGC-GCG- -5'
26810 5' -53.9 NC_005808.1 + 32450 0.67 0.662501
Target:  5'- gACUGCCccuacgcccccuacuGCCGAgGUGggGgcggccgAUGCGCc -3'
miRNA:   3'- aUGGCGG---------------CGGUUgUACuuCa------UGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 32384 0.66 0.725233
Target:  5'- gGCCGCCcagcaggaaGCCAGCAccGAaaaaaAGccGCGCGCc -3'
miRNA:   3'- aUGGCGG---------CGGUUGUa-CU-----UCa-UGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 31502 0.74 0.260259
Target:  5'- gGCCGCaGCCGACA--AGGUgcucGCGCGCg -3'
miRNA:   3'- aUGGCGgCGGUUGUacUUCA----UGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 30854 0.71 0.409232
Target:  5'- aACCuGUCGCCGAUcaguucgcacaAUGggGUGCGCa- -3'
miRNA:   3'- aUGG-CGGCGGUUG-----------UACuuCAUGCGcg -5'
26810 5' -53.9 NC_005808.1 + 30599 0.66 0.669305
Target:  5'- cGCUGCUgGCCGACGUGGaaaAGgccaagauUGCGCa -3'
miRNA:   3'- aUGGCGG-CGGUUGUACU---UCau------GCGCG- -5'
26810 5' -53.9 NC_005808.1 + 30140 0.67 0.635199
Target:  5'- cGCCGCCgGCCugcaccgcgucgGACAUcagcGGcAGUugGCGCc -3'
miRNA:   3'- aUGGCGG-CGG------------UUGUA----CU-UCAugCGCG- -5'
26810 5' -53.9 NC_005808.1 + 29741 0.68 0.601065
Target:  5'- cUACaacaaGCUGaCCAACAgcccgGAcgAGUugGCGCg -3'
miRNA:   3'- -AUGg----CGGC-GGUUGUa----CU--UCAugCGCG- -5'
26810 5' -53.9 NC_005808.1 + 28783 0.66 0.691874
Target:  5'- -uCCGCCGaguGGCAgGAGGcacagGCGCGCa -3'
miRNA:   3'- auGGCGGCgg-UUGUaCUUCa----UGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 28554 0.72 0.368273
Target:  5'- uUGCgGCCGCCGGCcaucgcgGCGCGCa -3'
miRNA:   3'- -AUGgCGGCGGUUGuacuucaUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 28475 0.68 0.578434
Target:  5'- aGCCGCUgGCCGACG---AGUACG-GCg -3'
miRNA:   3'- aUGGCGG-CGGUUGUacuUCAUGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.