Results 1 - 20 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26810 | 5' | -53.9 | NC_005808.1 | + | 27468 | 0.86 | 0.040706 |
Target: 5'- -uCCGCCGCCAGCAUGggGU-CGgGCc -3' miRNA: 3'- auGGCGGCGGUUGUACuuCAuGCgCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 18846 | 0.69 | 0.501159 |
Target: 5'- gGCCcgguGgCGCCGGCAUGgcGcugcUGCGCGCc -3' miRNA: 3'- aUGG----CgGCGGUUGUACuuC----AUGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 41566 | 0.69 | 0.510867 |
Target: 5'- aUGCUGCCGCCGGcCGUGGccuuccaGGUguucgACGCuGCg -3' miRNA: 3'- -AUGGCGGCGGUU-GUACU-------UCA-----UGCG-CG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 37808 | 0.66 | 0.725233 |
Target: 5'- cAgCGCCaGCCGGCGUGc--UGgGCGCa -3' miRNA: 3'- aUgGCGG-CGGUUGUACuucAUgCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 31502 | 0.74 | 0.260259 |
Target: 5'- gGCCGCaGCCGACA--AGGUgcucGCGCGCg -3' miRNA: 3'- aUGGCGgCGGUUGUacUUCA----UGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 20174 | 0.73 | 0.312305 |
Target: 5'- cGCCGCCGUCAagGCGUGGcuGGcgaacgucACGCGCu -3' miRNA: 3'- aUGGCGGCGGU--UGUACU--UCa-------UGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 34382 | 0.72 | 0.336916 |
Target: 5'- gGCCGCCGaCCAGCGcGAcuacgAGgcCGUGCg -3' miRNA: 3'- aUGGCGGC-GGUUGUaCU-----UCauGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 16841 | 0.72 | 0.345428 |
Target: 5'- uUGCCGCCGcCCAGCA------GCGCGCc -3' miRNA: 3'- -AUGGCGGC-GGUUGUacuucaUGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 34421 | 0.71 | 0.399675 |
Target: 5'- aAUCGCCGgCAGCAUccGGgcgcACGCGCa -3' miRNA: 3'- aUGGCGGCgGUUGUAcuUCa---UGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 8293 | 0.69 | 0.501159 |
Target: 5'- cGCUGCCggggcagugcaGCCAGC----GGUGCGCGCu -3' miRNA: 3'- aUGGCGG-----------CGGUUGuacuUCAUGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 30854 | 0.71 | 0.409232 |
Target: 5'- aACCuGUCGCCGAUcaguucgcacaAUGggGUGCGCa- -3' miRNA: 3'- aUGG-CGGCGGUUG-----------UACuuCAUGCGcg -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 33269 | 0.72 | 0.371878 |
Target: 5'- aUGCCGCCGCCcgccGCGccGAcGUGCGcCGCc -3' miRNA: 3'- -AUGGCGGCGGu---UGUa-CUuCAUGC-GCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 15106 | 0.76 | 0.198433 |
Target: 5'- gGCCgagGCCGCCGGCAUccucgcguGGUGCGUGCg -3' miRNA: 3'- aUGG---CGGCGGUUGUAcu------UCAUGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 21907 | 0.7 | 0.448836 |
Target: 5'- -cUCGUCGuCCAGCccAUaGAGUGCGCGCa -3' miRNA: 3'- auGGCGGC-GGUUG--UAcUUCAUGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 8751 | 0.75 | 0.240212 |
Target: 5'- cGCUaCCGUCAACAUGGAauuUGCGCGCg -3' miRNA: 3'- aUGGcGGCGGUUGUACUUc--AUGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 33371 | 0.72 | 0.371878 |
Target: 5'- aACUGCCGCCGggcgcgccGCA-GAAcGUGCGcCGCg -3' miRNA: 3'- aUGGCGGCGGU--------UGUaCUU-CAUGC-GCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 41454 | 0.7 | 0.473591 |
Target: 5'- gACCGCCGCCGuaGCGcGAgcuaacgguuacaccGGgccgAUGCGCg -3' miRNA: 3'- aUGGCGGCGGU--UGUaCU---------------UCa---UGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 28323 | 0.69 | 0.505464 |
Target: 5'- cAUCGCCGaCAGCAUGGugcagcaggccaaccAGuUGCGCGUg -3' miRNA: 3'- aUGGCGGCgGUUGUACU---------------UC-AUGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 14555 | 0.75 | 0.240212 |
Target: 5'- gACCGUCGCCGACGUGuucuucgGCGaCGCc -3' miRNA: 3'- aUGGCGGCGGUUGUACuuca---UGC-GCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 803 | 0.73 | 0.320355 |
Target: 5'- aAUCGCCGUCAGCAggUGGcugggcuugAGcGCGCGCa -3' miRNA: 3'- aUGGCGGCGGUUGU--ACU---------UCaUGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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