miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26810 5' -53.9 NC_005808.1 + 22303 0.68 0.567185
Target:  5'- gGCCGCCGagCAACccGcuacuGGUGCGgGCa -3'
miRNA:   3'- aUGGCGGCg-GUUGuaCu----UCAUGCgCG- -5'
26810 5' -53.9 NC_005808.1 + 41566 0.69 0.510867
Target:  5'- aUGCUGCCGCCGGcCGUGGccuuccaGGUguucgACGCuGCg -3'
miRNA:   3'- -AUGGCGGCGGUU-GUACU-------UCA-----UGCG-CG- -5'
26810 5' -53.9 NC_005808.1 + 33269 0.72 0.371878
Target:  5'- aUGCCGCCGCCcgccGCGccGAcGUGCGcCGCc -3'
miRNA:   3'- -AUGGCGGCGGu---UGUa-CUuCAUGC-GCG- -5'
26810 5' -53.9 NC_005808.1 + 14555 0.75 0.240212
Target:  5'- gACCGUCGCCGACGUGuucuucgGCGaCGCc -3'
miRNA:   3'- aUGGCGGCGGUUGUACuuca---UGC-GCG- -5'
26810 5' -53.9 NC_005808.1 + 38360 0.68 0.601065
Target:  5'- cACCGacuaCGCCAucuacgucugcgACgAUGGcacGGUGCGCGCc -3'
miRNA:   3'- aUGGCg---GCGGU------------UG-UACU---UCAUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 10172 0.68 0.578434
Target:  5'- cGCUGCCGUCGucuugGCA-GAcGUgGCGCGCg -3'
miRNA:   3'- aUGGCGGCGGU-----UGUaCUuCA-UGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 18846 0.69 0.501159
Target:  5'- gGCCcgguGgCGCCGGCAUGgcGcugcUGCGCGCc -3'
miRNA:   3'- aUGG----CgGCGGUUGUACuuC----AUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 8751 0.75 0.240212
Target:  5'- cGCUaCCGUCAACAUGGAauuUGCGCGCg -3'
miRNA:   3'- aUGGcGGCGGUUGUACUUc--AUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 25041 0.68 0.577307
Target:  5'- cACCGgCGCCGACAucauucUGAccaaucaAGUcaacgcggugGCGCGCu -3'
miRNA:   3'- aUGGCgGCGGUUGU------ACU-------UCA----------UGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 15106 0.76 0.198433
Target:  5'- gGCCgagGCCGCCGGCAUccucgcguGGUGCGUGCg -3'
miRNA:   3'- aUGG---CGGCGGUUGUAcu------UCAUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 28323 0.69 0.505464
Target:  5'- cAUCGCCGaCAGCAUGGugcagcaggccaaccAGuUGCGCGUg -3'
miRNA:   3'- aUGGCGGCgGUUGUACU---------------UC-AUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 14022 0.68 0.567185
Target:  5'- --aCGCUGCCggUGgccGAcGUGCGCGCc -3'
miRNA:   3'- augGCGGCGGuuGUa--CUuCAUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 21907 0.7 0.448836
Target:  5'- -cUCGUCGuCCAGCccAUaGAGUGCGCGCa -3'
miRNA:   3'- auGGCGGC-GGUUG--UAcUUCAUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 34421 0.71 0.399675
Target:  5'- aAUCGCCGgCAGCAUccGGgcgcACGCGCa -3'
miRNA:   3'- aUGGCGGCgGUUGUAcuUCa---UGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 34382 0.72 0.336916
Target:  5'- gGCCGCCGaCCAGCGcGAcuacgAGgcCGUGCg -3'
miRNA:   3'- aUGGCGGC-GGUUGUaCU-----UCauGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 31502 0.74 0.260259
Target:  5'- gGCCGCaGCCGACA--AGGUgcucGCGCGCg -3'
miRNA:   3'- aUGGCGgCGGUUGUacUUCA----UGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 9084 0.67 0.635199
Target:  5'- gUGCCGCgauaGCCAGCGgugGccGUGC-CGCg -3'
miRNA:   3'- -AUGGCGg---CGGUUGUa--CuuCAUGcGCG- -5'
26810 5' -53.9 NC_005808.1 + 29741 0.68 0.601065
Target:  5'- cUACaacaaGCUGaCCAACAgcccgGAcgAGUugGCGCg -3'
miRNA:   3'- -AUGg----CGGC-GGUUGUa----CU--UCAugCGCG- -5'
26810 5' -53.9 NC_005808.1 + 13282 0.68 0.58973
Target:  5'- gACCGCCaCCGcCuUGAAGUGCuGgGCa -3'
miRNA:   3'- aUGGCGGcGGUuGuACUUCAUG-CgCG- -5'
26810 5' -53.9 NC_005808.1 + 18685 0.68 0.578434
Target:  5'- cGCCuaUGCCGGCAUgGAAGccGCGgGCg -3'
miRNA:   3'- aUGGcgGCGGUUGUA-CUUCa-UGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.