miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26813 3' -52.4 NC_005808.1 + 9400 0.66 0.774802
Target:  5'- cGCGAUAgccaGCGGUggccGUGCCgaggGCGcCCACu -3'
miRNA:   3'- aUGUUGUa---CGCCG----UAUGGa---UGC-GGUG- -5'
26813 3' -52.4 NC_005808.1 + 14767 0.66 0.774802
Target:  5'- cGCAGCGUGuCGGUGUcgAUCUGCuUCACg -3'
miRNA:   3'- aUGUUGUAC-GCCGUA--UGGAUGcGGUG- -5'
26813 3' -52.4 NC_005808.1 + 42261 0.66 0.774802
Target:  5'- gGCGagcACGUGUGGCAcgACCcccggUACGgCACg -3'
miRNA:   3'- aUGU---UGUACGCCGUa-UGG-----AUGCgGUG- -5'
26813 3' -52.4 NC_005808.1 + 33983 0.66 0.774802
Target:  5'- aAgGGCGUacCGGCcacGCCUACGCCAUc -3'
miRNA:   3'- aUgUUGUAc-GCCGua-UGGAUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 25303 0.66 0.774802
Target:  5'- ----uCGUGCGGCcgGCCc-UGCCACc -3'
miRNA:   3'- auguuGUACGCCGuaUGGauGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 2135 0.66 0.774802
Target:  5'- gUGCAGCAgcCGGUcaACC-GCGCCGCc -3'
miRNA:   3'- -AUGUUGUacGCCGuaUGGaUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 1080 0.66 0.764073
Target:  5'- aAC-GCGcGCGGUAgauUGCCUugGCCGu -3'
miRNA:   3'- aUGuUGUaCGCCGU---AUGGAugCGGUg -5'
26813 3' -52.4 NC_005808.1 + 13622 0.66 0.764073
Target:  5'- gACAGCAUcgguaGCGGCAgcaaguCCgGCGCgGCc -3'
miRNA:   3'- aUGUUGUA-----CGCCGUau----GGaUGCGgUG- -5'
26813 3' -52.4 NC_005808.1 + 22311 0.66 0.753191
Target:  5'- gGCAGCAcgaugcUGCuGGcCGUGCCgaacGCGCCGa -3'
miRNA:   3'- aUGUUGU------ACG-CC-GUAUGGa---UGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 33902 0.66 0.753191
Target:  5'- gGCAGCAaucugcGCGGCGcacACCUGgGCgCGCa -3'
miRNA:   3'- aUGUUGUa-----CGCCGUa--UGGAUgCG-GUG- -5'
26813 3' -52.4 NC_005808.1 + 8208 0.66 0.753191
Target:  5'- aGCGACAUgGCGGCcaguuCgUGCGCgGCc -3'
miRNA:   3'- aUGUUGUA-CGCCGuau--GgAUGCGgUG- -5'
26813 3' -52.4 NC_005808.1 + 4047 0.66 0.753191
Target:  5'- cGCGGCGaGCGGCAgGCCaGCgGCC-Ca -3'
miRNA:   3'- aUGUUGUaCGCCGUaUGGaUG-CGGuG- -5'
26813 3' -52.4 NC_005808.1 + 42445 0.66 0.753191
Target:  5'- cGCAuccGCcUGCGGgGaaGCCUgGCGCCACg -3'
miRNA:   3'- aUGU---UGuACGCCgUa-UGGA-UGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 11198 0.66 0.742171
Target:  5'- --gAugGUGCGGUcaAUGCCgcgcaugacCGCCACg -3'
miRNA:   3'- augUugUACGCCG--UAUGGau-------GCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 17019 0.66 0.742171
Target:  5'- gGCcGCAgaccGCGGCGUACaacuccgACGCCGa -3'
miRNA:   3'- aUGuUGUa---CGCCGUAUGga-----UGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 1747 0.66 0.742171
Target:  5'- aACAcCggGCGGuCAUggccgGCCUGCGCCugGCg -3'
miRNA:   3'- aUGUuGuaCGCC-GUA-----UGGAUGCGG--UG- -5'
26813 3' -52.4 NC_005808.1 + 21875 0.66 0.73884
Target:  5'- aGCAGCAUGuCGGCcugauggggugcccGUGCCU-CGUCGu -3'
miRNA:   3'- aUGUUGUAC-GCCG--------------UAUGGAuGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 34130 0.66 0.731026
Target:  5'- -uCGGC-UGCGGCAUcgcaggccACCUcgACGCCGa -3'
miRNA:   3'- auGUUGuACGCCGUA--------UGGA--UGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 8778 0.66 0.728783
Target:  5'- gGCAGCAcGCGGCGcacgaugggucgGCC-GCGCCGg -3'
miRNA:   3'- aUGUUGUaCGCCGUa-----------UGGaUGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 5441 0.66 0.71977
Target:  5'- gGCGGCGUGggcgagguCGGUAUcgACCaucACGCCGCg -3'
miRNA:   3'- aUGUUGUAC--------GCCGUA--UGGa--UGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.