miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26815 5' -58.2 NC_005809.1 + 12903 0.66 0.484495
Target:  5'- -aACACaCGGCCgcGCCCugCUGGgCa- -3'
miRNA:   3'- gaUGUG-GUUGGa-CGGGugGACCgGcu -5'
26815 5' -58.2 NC_005809.1 + 31704 0.66 0.484495
Target:  5'- -aGCACCGccugACCaGCCCGCCgcgcgcgGGCUu- -3'
miRNA:   3'- gaUGUGGU----UGGaCGGGUGGa------CCGGcu -5'
26815 5' -58.2 NC_005809.1 + 14810 0.66 0.484495
Target:  5'- cCUGCACCucggcGGCgCUGCCUucGCCcaGGUCGAu -3'
miRNA:   3'- -GAUGUGG-----UUG-GACGGG--UGGa-CCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 5575 0.66 0.484495
Target:  5'- -gGCGCCAACgCUGgCCGCCaccGuGUCGAu -3'
miRNA:   3'- gaUGUGGUUG-GACgGGUGGa--C-CGGCU- -5'
26815 5' -58.2 NC_005809.1 + 37328 0.66 0.474276
Target:  5'- -gACcCCGACCUGCCgGCCgaacuGCgCGAa -3'
miRNA:   3'- gaUGuGGUUGGACGGgUGGac---CG-GCU- -5'
26815 5' -58.2 NC_005809.1 + 37133 0.66 0.474276
Target:  5'- -gAUACCGACCUcGCCCACgccGCCa- -3'
miRNA:   3'- gaUGUGGUUGGA-CGGGUGgacCGGcu -5'
26815 5' -58.2 NC_005809.1 + 24466 0.66 0.474276
Target:  5'- -gACGCCGacgACCUG-CUGCUUGGCCu- -3'
miRNA:   3'- gaUGUGGU---UGGACgGGUGGACCGGcu -5'
26815 5' -58.2 NC_005809.1 + 37922 0.66 0.464167
Target:  5'- -cGCAaCAACCUGUCCgAUCUuGCCGAc -3'
miRNA:   3'- gaUGUgGUUGGACGGG-UGGAcCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 31160 0.66 0.464167
Target:  5'- -cACGCCGGCucgccgCUGCUCAagacCCUGGCCc- -3'
miRNA:   3'- gaUGUGGUUG------GACGGGU----GGACCGGcu -5'
26815 5' -58.2 NC_005809.1 + 37949 0.66 0.464167
Target:  5'- cCUGCGgCAGCgCggGCCaacauugGCCUGGCUGAc -3'
miRNA:   3'- -GAUGUgGUUG-Ga-CGGg------UGGACCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 36198 0.66 0.463162
Target:  5'- -gGCgGCCGACCUgguguaacccagcGCCCcgGCCUucgGGCCGGg -3'
miRNA:   3'- gaUG-UGGUUGGA-------------CGGG--UGGA---CCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 13926 0.66 0.454171
Target:  5'- -gGCACCGAUcuggcaCUGCgCGCggaaCUGGCCGGc -3'
miRNA:   3'- gaUGUGGUUG------GACGgGUG----GACCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 18567 0.66 0.454171
Target:  5'- aUugGCCGACgC-GCCCACCuucgccagucugUGcGCCGAa -3'
miRNA:   3'- gAugUGGUUG-GaCGGGUGG------------AC-CGGCU- -5'
26815 5' -58.2 NC_005809.1 + 12206 0.66 0.45417
Target:  5'- -cGCGCU-GCCUGCC--CCUGGUCGGg -3'
miRNA:   3'- gaUGUGGuUGGACGGguGGACCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 37040 0.66 0.453177
Target:  5'- aUugACCAGaagCUGCCgGCCUGGaacuaccaaggcaCCGAg -3'
miRNA:   3'- gAugUGGUUg--GACGGgUGGACC-------------GGCU- -5'
26815 5' -58.2 NC_005809.1 + 37750 0.66 0.444293
Target:  5'- aCUACGgCGACCUG-UCGCC-GGCCa- -3'
miRNA:   3'- -GAUGUgGUUGGACgGGUGGaCCGGcu -5'
26815 5' -58.2 NC_005809.1 + 24905 0.66 0.444293
Target:  5'- cCUACGcCCAGCCcGCCgaCGCCaucaagaucgUGGCCGu -3'
miRNA:   3'- -GAUGU-GGUUGGaCGG--GUGG----------ACCGGCu -5'
26815 5' -58.2 NC_005809.1 + 35316 0.67 0.434536
Target:  5'- gCUGCACaagGCCggcgacaucgGCCCgcGCCagUGGCCGAa -3'
miRNA:   3'- -GAUGUGgu-UGGa---------CGGG--UGG--ACCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 37466 0.67 0.424905
Target:  5'- -gGCGCCAGCC-GCaccggaCGCUgGGCCGGc -3'
miRNA:   3'- gaUGUGGUUGGaCGg-----GUGGaCCGGCU- -5'
26815 5' -58.2 NC_005809.1 + 20882 0.67 0.424905
Target:  5'- -aACcUCGACCUGUCgCACCUucuGGCUGAc -3'
miRNA:   3'- gaUGuGGUUGGACGG-GUGGA---CCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.