Results 21 - 40 of 235 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26829 | 5' | -53 | NC_005809.1 | + | 38316 | 0.73 | 0.3816 |
Target: 5'- uGCCGGCGCUGACGgcCGGCACCGa--- -3' miRNA: 3'- -CGGUUGCGGUUGCa-GUUGUGGCaccg -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 37977 | 0.67 | 0.744829 |
Target: 5'- cGCCGAgGCCGAgcaGUUccuCGCC-UGGCg -3' miRNA: 3'- -CGGUUgCGGUUg--CAGuu-GUGGcACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 37932 | 0.67 | 0.701175 |
Target: 5'- cGCgAugGCCGAC----GCAgCGUGGCc -3' miRNA: 3'- -CGgUugCGGUUGcaguUGUgGCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 37814 | 0.71 | 0.511556 |
Target: 5'- gGCgAACGCCGagaACaUCGcgGCCGUGGCc -3' miRNA: 3'- -CGgUUGCGGU---UGcAGUugUGGCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 37693 | 0.67 | 0.712225 |
Target: 5'- -aCGAgGCCGcCGUCGccGCGCUG-GGCa -3' miRNA: 3'- cgGUUgCGGUuGCAGU--UGUGGCaCCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 37662 | 0.78 | 0.199875 |
Target: 5'- aUCGcUGCCGACGUUucCACCGUGGCc -3' miRNA: 3'- cGGUuGCGGUUGCAGuuGUGGCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 37597 | 0.74 | 0.349688 |
Target: 5'- cGCCAACGUCAugGaacugaccagCAgcgcgauacgcggcuGCAUCGUGGCg -3' miRNA: 3'- -CGGUUGCGGUugCa---------GU---------------UGUGGCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 37464 | 0.66 | 0.786558 |
Target: 5'- -aCGGCGCCAGCc---GCACCGgacgcugGGCc -3' miRNA: 3'- cgGUUGCGGUUGcaguUGUGGCa------CCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 37331 | 1.15 | 0.000541 |
Target: 5'- uGCCAACGCCAACGUCAACACCGUGGCg -3' miRNA: 3'- -CGGUUGCGGUUGCAGUUGUGGCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 37300 | 0.76 | 0.241552 |
Target: 5'- -aCAACGCCGcgaACaUCAACACgGUGGCc -3' miRNA: 3'- cgGUUGCGGU---UGcAGUUGUGgCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 37260 | 0.86 | 0.057778 |
Target: 5'- uCCGugGCCGGCGaccuggaaaauaUCGACGCCGUGGCc -3' miRNA: 3'- cGGUugCGGUUGC------------AGUUGUGGCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 37229 | 0.77 | 0.216914 |
Target: 5'- gGCUGuCGCCAACGacaUCGACAgCGUGGUa -3' miRNA: 3'- -CGGUuGCGGUUGC---AGUUGUgGCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 37144 | 0.73 | 0.409637 |
Target: 5'- cGCCcACGCCGcCaUCcGCGCCGUGGa -3' miRNA: 3'- -CGGuUGCGGUuGcAGuUGUGGCACCg -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 37007 | 0.89 | 0.036845 |
Target: 5'- gGCCAGCGUUGGCGccgUCGAUACCGUGGCg -3' miRNA: 3'- -CGGUUGCGGUUGC---AGUUGUGGCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 36978 | 0.7 | 0.555235 |
Target: 5'- aCCAACgagGCgGACaUCGACACgGUGGCn -3' miRNA: 3'- cGGUUG---CGgUUGcAGUUGUGgCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 36948 | 0.92 | 0.023402 |
Target: 5'- gGCCAccuCGCCAACaUCGACGCCGUGGCu -3' miRNA: 3'- -CGGUu--GCGGUUGcAGUUGUGGCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 36312 | 0.67 | 0.712225 |
Target: 5'- cCCAGCGCgCAGa-UCAaccGCACCGUuaccGGCg -3' miRNA: 3'- cGGUUGCG-GUUgcAGU---UGUGGCA----CCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 36143 | 0.73 | 0.390803 |
Target: 5'- aGCCAagaccgugacagGCGCCAACGaCAugggccgcgacuACACCG-GGCc -3' miRNA: 3'- -CGGU------------UGCGGUUGCaGU------------UGUGGCaCCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 36039 | 0.74 | 0.321335 |
Target: 5'- cGUCAACGCCAGCaUCGA-ACUGUGGg -3' miRNA: 3'- -CGGUUGCGGUUGcAGUUgUGGCACCg -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 35824 | 0.75 | 0.305477 |
Target: 5'- cGCCAaggaaaagugggGCGCCAAgGcCGACGCCGUGcucaaGCa -3' miRNA: 3'- -CGGU------------UGCGGUUgCaGUUGUGGCAC-----CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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