miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26830 5' -53.1 NC_005809.1 + 34834 0.69 0.632228
Target:  5'- cGUCGCCAACaGCAagcCGGCcgccgAGCGUGc -3'
miRNA:   3'- aCAGCGGUUGcUGUa--GCUG-----UCGCACc -5'
26830 5' -53.1 NC_005809.1 + 34569 0.66 0.764079
Target:  5'- cUGgCGCCAAgGGCAcgucCGACGcCGUGGu -3'
miRNA:   3'- -ACaGCGGUUgCUGUa---GCUGUcGCACC- -5'
26830 5' -53.1 NC_005809.1 + 34279 0.66 0.764079
Target:  5'- --cCGCUGGCuGCAcugcccCGGCAGCGUGGc -3'
miRNA:   3'- acaGCGGUUGcUGUa-----GCUGUCGCACC- -5'
26830 5' -53.1 NC_005809.1 + 34061 0.75 0.305312
Target:  5'- -uUCGCCGGCGACAUCaagGGCAucGaCGUGGa -3'
miRNA:   3'- acAGCGGUUGCUGUAG---CUGU--C-GCACC- -5'
26830 5' -53.1 NC_005809.1 + 33078 0.72 0.458257
Target:  5'- gGUCGCgCAGCGACG-CGGCGGCc--- -3'
miRNA:   3'- aCAGCG-GUUGCUGUaGCUGUCGcacc -5'
26830 5' -53.1 NC_005809.1 + 32427 0.67 0.699392
Target:  5'- cGUCuGCCAA-GACGaCGGCAGCGa-- -3'
miRNA:   3'- aCAG-CGGUUgCUGUaGCUGUCGCacc -5'
26830 5' -53.1 NC_005809.1 + 30524 0.67 0.732208
Target:  5'- cGgCGCCAuCGACuUCGACAcGC-UGGg -3'
miRNA:   3'- aCaGCGGUuGCUGuAGCUGU-CGcACC- -5'
26830 5' -53.1 NC_005809.1 + 30141 0.76 0.261528
Target:  5'- ---gGUCGGCGACAUCGACAGCGc-- -3'
miRNA:   3'- acagCGGUUGCUGUAGCUGUCGCacc -5'
26830 5' -53.1 NC_005809.1 + 29961 0.7 0.542983
Target:  5'- uUGUCGUC-GCGGCGcaCGACGGCcUGGa -3'
miRNA:   3'- -ACAGCGGuUGCUGUa-GCUGUCGcACC- -5'
26830 5' -53.1 NC_005809.1 + 28891 0.68 0.665959
Target:  5'- --aCGCCGACGACAUCcucACGGUGcgcGGu -3'
miRNA:   3'- acaGCGGUUGCUGUAGc--UGUCGCa--CC- -5'
26830 5' -53.1 NC_005809.1 + 28668 0.69 0.609721
Target:  5'- --gUGCCGGCGGCcUCGcCAGCGcGGc -3'
miRNA:   3'- acaGCGGUUGCUGuAGCuGUCGCaCC- -5'
26830 5' -53.1 NC_005809.1 + 28558 0.69 0.597372
Target:  5'- gGcCGCCGgccaucgcggcGCGcACGUCGgccaccgGCAGCGUGGu -3'
miRNA:   3'- aCaGCGGU-----------UGC-UGUAGC-------UGUCGCACC- -5'
26830 5' -53.1 NC_005809.1 + 28039 0.7 0.565025
Target:  5'- cGUCGCCGaagaacacgucgGCGACGgucugcUCGAaCAGCG-GGc -3'
miRNA:   3'- aCAGCGGU------------UGCUGU------AGCU-GUCGCaCC- -5'
26830 5' -53.1 NC_005809.1 + 27739 0.78 0.19467
Target:  5'- gGcCGCCAACGGCAUCGACcugGGCGa-- -3'
miRNA:   3'- aCaGCGGUUGCUGUAGCUG---UCGCacc -5'
26830 5' -53.1 NC_005809.1 + 27291 0.71 0.47882
Target:  5'- cUGUCGCCGaaAUGGgG-CGACAGCG-GGc -3'
miRNA:   3'- -ACAGCGGU--UGCUgUaGCUGUCGCaCC- -5'
26830 5' -53.1 NC_005809.1 + 27008 0.67 0.699392
Target:  5'- cGUCGUCAcugacgGCGcCAUUGACcuGGaCGUGGa -3'
miRNA:   3'- aCAGCGGU------UGCuGUAGCUG--UC-GCACC- -5'
26830 5' -53.1 NC_005809.1 + 25284 0.67 0.710415
Target:  5'- aUGcgCGCCcGCGGCGcCGGCuuCGUGGa -3'
miRNA:   3'- -ACa-GCGGuUGCUGUaGCUGucGCACC- -5'
26830 5' -53.1 NC_005809.1 + 24552 0.67 0.699392
Target:  5'- gGUCGCgCAGCG-CggCGAUGGCGaGGc -3'
miRNA:   3'- aCAGCG-GUUGCuGuaGCUGUCGCaCC- -5'
26830 5' -53.1 NC_005809.1 + 23397 0.7 0.576136
Target:  5'- cGaCGCCGGCGGCAcgGGCAGCGa-- -3'
miRNA:   3'- aCaGCGGUUGCUGUagCUGUCGCacc -5'
26830 5' -53.1 NC_005809.1 + 23098 0.72 0.418607
Target:  5'- cGaCGCCAACGGCGgcgcccacggCGACAGCGg-- -3'
miRNA:   3'- aCaGCGGUUGCUGUa---------GCUGUCGCacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.