miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26831 3' -54.6 NC_005809.1 + 24802 0.66 0.704941
Target:  5'- cGCGUUGAaguCGCCGUacagcaucuGGCUGCgCAAUGGc -3'
miRNA:   3'- -UGUAGCU---GCGGCA---------CCGAUG-GUUGCUc -5'
26831 3' -54.6 NC_005809.1 + 32657 0.66 0.704941
Target:  5'- --uUCGGCGCCGcgaaGCUGCCcGACGuGa -3'
miRNA:   3'- uguAGCUGCGGCac--CGAUGG-UUGCuC- -5'
26831 3' -54.6 NC_005809.1 + 24628 0.66 0.704941
Target:  5'- cACGUCGAa-CCacaUGGCgUGCCGGCGGGc -3'
miRNA:   3'- -UGUAGCUgcGGc--ACCG-AUGGUUGCUC- -5'
26831 3' -54.6 NC_005809.1 + 24933 0.66 0.693906
Target:  5'- -gAUCGugGCCGUa-CUGCCcACGAu -3'
miRNA:   3'- ugUAGCugCGGCAccGAUGGuUGCUc -5'
26831 3' -54.6 NC_005809.1 + 13878 0.66 0.691691
Target:  5'- aGCAUCGACcuugugaacgaCGUGGCgcgccgcGCUGGCGAGg -3'
miRNA:   3'- -UGUAGCUGcg---------GCACCGa------UGGUUGCUC- -5'
26831 3' -54.6 NC_005809.1 + 18411 0.66 0.682809
Target:  5'- cACGUCGGCGaagGUGGCguuguCCGcCGAGu -3'
miRNA:   3'- -UGUAGCUGCgg-CACCGau---GGUuGCUC- -5'
26831 3' -54.6 NC_005809.1 + 36178 0.66 0.682809
Target:  5'- gACAUCaccgagGGCGCCGcGGCgGCCGACc-- -3'
miRNA:   3'- -UGUAG------CUGCGGCaCCGaUGGUUGcuc -5'
26831 3' -54.6 NC_005809.1 + 13804 0.66 0.682809
Target:  5'- aGCG-CGACGCCGUGcGC-GCCGA-GAa -3'
miRNA:   3'- -UGUaGCUGCGGCAC-CGaUGGUUgCUc -5'
26831 3' -54.6 NC_005809.1 + 33799 0.66 0.671661
Target:  5'- cCAUCGuGCGCCGcGuGCUGCCcgaAGCGGc -3'
miRNA:   3'- uGUAGC-UGCGGCaC-CGAUGG---UUGCUc -5'
26831 3' -54.6 NC_005809.1 + 8455 0.66 0.660475
Target:  5'- gAUGUCGGCGUCGaGGUgGCCuGCGAu -3'
miRNA:   3'- -UGUAGCUGCGGCaCCGaUGGuUGCUc -5'
26831 3' -54.6 NC_005809.1 + 8977 0.66 0.660475
Target:  5'- cCAgCGugGCCGUGccGCgauaGCCAGCGGu -3'
miRNA:   3'- uGUaGCugCGGCAC--CGa---UGGUUGCUc -5'
26831 3' -54.6 NC_005809.1 + 5346 0.67 0.649261
Target:  5'- -uGUCGAUGUCGuUGGCgacaGCCAACa-- -3'
miRNA:   3'- ugUAGCUGCGGC-ACCGa---UGGUUGcuc -5'
26831 3' -54.6 NC_005809.1 + 36127 0.67 0.638031
Target:  5'- gACggCGACGCCuucgcgggcgGUGGUgucGCgAGCGAGg -3'
miRNA:   3'- -UGuaGCUGCGG----------CACCGa--UGgUUGCUC- -5'
26831 3' -54.6 NC_005809.1 + 37021 0.67 0.638031
Target:  5'- cCGUCGAUaCCGUGGCgggcgACCuggGCGGa -3'
miRNA:   3'- uGUAGCUGcGGCACCGa----UGGu--UGCUc -5'
26831 3' -54.6 NC_005809.1 + 27726 0.67 0.626795
Target:  5'- aGCGUgCGGCGC--UGGCcGCCAACGGc -3'
miRNA:   3'- -UGUA-GCUGCGgcACCGaUGGUUGCUc -5'
26831 3' -54.6 NC_005809.1 + 25803 0.67 0.615564
Target:  5'- cCAUCGccuucacguCGCCgGUGGCUacGCCcACGAGc -3'
miRNA:   3'- uGUAGCu--------GCGG-CACCGA--UGGuUGCUC- -5'
26831 3' -54.6 NC_005809.1 + 18815 0.67 0.604348
Target:  5'- cGCAUCGGC-CCgGUGGC-GCCGGCa-- -3'
miRNA:   3'- -UGUAGCUGcGG-CACCGaUGGUUGcuc -5'
26831 3' -54.6 NC_005809.1 + 29926 0.67 0.593157
Target:  5'- cGCAUCagUGCCGUGGCUuGCCAGucAGg -3'
miRNA:   3'- -UGUAGcuGCGGCACCGA-UGGUUgcUC- -5'
26831 3' -54.6 NC_005809.1 + 5638 0.67 0.593157
Target:  5'- gGCGagGugGCCGUacacGGCggaaACCAGCGGu -3'
miRNA:   3'- -UGUagCugCGGCA----CCGa---UGGUUGCUc -5'
26831 3' -54.6 NC_005809.1 + 27597 0.67 0.593157
Target:  5'- ---cCGACGCCauucUGGCgACCGGCGAc -3'
miRNA:   3'- uguaGCUGCGGc---ACCGaUGGUUGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.