Results 21 - 40 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26831 | 5' | -60.5 | NC_005809.1 | + | 27434 | 0.66 | 0.354132 |
Target: 5'- -cCGCGcccGGCGGCCgcaGGCccUGGCGCu -3' miRNA: 3'- cuGUGCca-CCGCCGG---UCGcaACCGCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 26764 | 0.67 | 0.306648 |
Target: 5'- uGCGCGGUGGUGGCCgAGgGUaacgaGGaccgGCu -3' miRNA: 3'- cUGUGCCACCGCCGG-UCgCAa----CCg---CG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 25050 | 0.69 | 0.244816 |
Target: 5'- aACGCGGUGGCGcGCuauauCAGC-UUGGUGa -3' miRNA: 3'- cUGUGCCACCGC-CG-----GUCGcAACCGCg -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 23713 | 0.67 | 0.299225 |
Target: 5'- aGCGCccaGGUcGCgGGCCAGUGccucggUGGCGCg -3' miRNA: 3'- cUGUG---CCAcCG-CCGGUCGCa-----ACCGCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 22231 | 0.71 | 0.183686 |
Target: 5'- uGACGCGGcccUGGUugucGGCC-GCGaUGGCGUa -3' miRNA: 3'- -CUGUGCC---ACCG----CCGGuCGCaACCGCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 21724 | 0.69 | 0.226634 |
Target: 5'- aACGCGGUacGGauGCCAcCGUUgGGCGCg -3' miRNA: 3'- cUGUGCCA--CCgcCGGUcGCAA-CCGCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 21584 | 0.73 | 0.122222 |
Target: 5'- cGGCcacuuCGGUGGCGGUCAucuGCGgauUGGUGCc -3' miRNA: 3'- -CUGu----GCCACCGCCGGU---CGCa--ACCGCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 21432 | 0.71 | 0.174135 |
Target: 5'- gGGCGCGGacacGGCGGCCAaGCug-GGCaGCg -3' miRNA: 3'- -CUGUGCCa---CCGCCGGU-CGcaaCCG-CG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 21246 | 0.66 | 0.388558 |
Target: 5'- gGGCGCGGUGGcCGGCaucaAGCccgaaGUGCu -3' miRNA: 3'- -CUGUGCCACC-GCCGg---UCGcaac-CGCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 19344 | 0.66 | 0.379748 |
Target: 5'- aGGCGCGGUcGGUGGCCgaGGCcgaGGC-Cg -3' miRNA: 3'- -CUGUGCCA-CCGCCGG--UCGcaaCCGcG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 18820 | 0.75 | 0.087425 |
Target: 5'- cGGCcCGGUGGC-GCCGGCa-UGGCGCu -3' miRNA: 3'- -CUGuGCCACCGcCGGUCGcaACCGCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 18669 | 0.68 | 0.291941 |
Target: 5'- cGGCAUGGaaGCcGCgGGCG-UGGCGCa -3' miRNA: 3'- -CUGUGCCacCGcCGgUCGCaACCGCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 18395 | 0.8 | 0.038128 |
Target: 5'- uGGCGcCGGUGGCGGCCacgucGGCGaaggUGGCGUu -3' miRNA: 3'- -CUGU-GCCACCGCCGG-----UCGCa---ACCGCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 18317 | 0.68 | 0.284797 |
Target: 5'- aGACACGGcaguaGCGGCgCAGC-UUGGUGg -3' miRNA: 3'- -CUGUGCCac---CGCCG-GUCGcAACCGCg -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 17898 | 0.68 | 0.277791 |
Target: 5'- gGGCGUGGacGUGGCCcGCGgcgGGCGCg -3' miRNA: 3'- -CUGUGCCacCGCCGGuCGCaa-CCGCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 17092 | 0.67 | 0.32976 |
Target: 5'- cGGCGCGGUucuCGGCCGgGCcUUGGgGCu -3' miRNA: 3'- -CUGUGCCAcc-GCCGGU-CGcAACCgCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 17034 | 0.69 | 0.244816 |
Target: 5'- cGGCuACGGgGGCGcuGCCGGCGgcGGCa- -3' miRNA: 3'- -CUG-UGCCaCCGC--CGGUCGCaaCCGcg -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 16581 | 0.7 | 0.209609 |
Target: 5'- cGACGCGccGGacgaGGCCgaccacgcgauGGUGUUGGCGCc -3' miRNA: 3'- -CUGUGCcaCCg---CCGG-----------UCGCAACCGCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 16245 | 0.71 | 0.178854 |
Target: 5'- cGGCACGauaUGGCGGauGGCGUUGGCcucGCg -3' miRNA: 3'- -CUGUGCc--ACCGCCggUCGCAACCG---CG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 15539 | 0.69 | 0.220832 |
Target: 5'- uGCACGGUGcCGGCCuccaCGUccaggucaaUGGCGCc -3' miRNA: 3'- cUGUGCCACcGCCGGuc--GCA---------ACCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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