miRNA display CGI


Results 21 - 40 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26832 3' -51.8 NC_005809.1 + 10028 0.67 0.775391
Target:  5'- gGCaUCGCCGGCGgcAGCauccUGGCCGGcaucACCa -3'
miRNA:   3'- -UG-AGCGGCUGU--UUGa---AUCGGCU----UGGc -5'
26832 3' -51.8 NC_005809.1 + 11249 0.66 0.834737
Target:  5'- -gUCGCCG-CGAcCUgggauuccAGCCGGGCCa -3'
miRNA:   3'- ugAGCGGCuGUUuGAa-------UCGGCUUGGc -5'
26832 3' -51.8 NC_005809.1 + 26892 0.66 0.852793
Target:  5'- cUUCGUCGAUAGcggccugacguACUcGGgCGAGCCGg -3'
miRNA:   3'- uGAGCGGCUGUU-----------UGAaUCgGCUUGGC- -5'
26832 3' -51.8 NC_005809.1 + 30556 0.67 0.795945
Target:  5'- cCUCGCCGGCcacggccgcGCUgcUGGCCGAcguggaaaagGCCa -3'
miRNA:   3'- uGAGCGGCUGuu-------UGA--AUCGGCU----------UGGc -5'
26832 3' -51.8 NC_005809.1 + 9234 0.66 0.815759
Target:  5'- gAUUCGCCaGCGG---UGGCCGuGCCGg -3'
miRNA:   3'- -UGAGCGGcUGUUugaAUCGGCuUGGC- -5'
26832 3' -51.8 NC_005809.1 + 9378 0.66 0.834737
Target:  5'- gAUUCGCCaGCGG---UGGCCGuGCCGa -3'
miRNA:   3'- -UGAGCGGcUGUUugaAUCGGCuUGGC- -5'
26832 3' -51.8 NC_005809.1 + 16938 0.68 0.72142
Target:  5'- aACUCGCCGAgGuggacgcgcuGCUggcGCCGcGCCGc -3'
miRNA:   3'- -UGAGCGGCUgUu---------UGAau-CGGCuUGGC- -5'
26832 3' -51.8 NC_005809.1 + 33279 0.66 0.804959
Target:  5'- -gUCGCCGAgGAagucaauGCgcAGCCGGuguACCGg -3'
miRNA:   3'- ugAGCGGCUgUU-------UGaaUCGGCU---UGGC- -5'
26832 3' -51.8 NC_005809.1 + 31023 0.66 0.852793
Target:  5'- gGCUUGCCGGCcgAGGCaaucGCgCGGGCCa -3'
miRNA:   3'- -UGAGCGGCUG--UUUGaau-CG-GCUUGGc -5'
26832 3' -51.8 NC_005809.1 + 41849 0.72 0.496189
Target:  5'- --cCGCCaGGCGcucGACUUGGCCGuGGCCGa -3'
miRNA:   3'- ugaGCGG-CUGU---UUGAAUCGGC-UUGGC- -5'
26832 3' -51.8 NC_005809.1 + 31507 0.68 0.732458
Target:  5'- uGC-CGCCGGCGuGCU--GCUGGGCCu -3'
miRNA:   3'- -UGaGCGGCUGUuUGAauCGGCUUGGc -5'
26832 3' -51.8 NC_005809.1 + 18365 0.68 0.72142
Target:  5'- gUUUGCCGGCGgcgAGgUUGGCCuuGCCGa -3'
miRNA:   3'- uGAGCGGCUGU---UUgAAUCGGcuUGGC- -5'
26832 3' -51.8 NC_005809.1 + 26071 0.66 0.843885
Target:  5'- --gCGCuCGGCGAACUcgGGgCGGGCCu -3'
miRNA:   3'- ugaGCG-GCUGUUUGAa-UCgGCUUGGc -5'
26832 3' -51.8 NC_005809.1 + 24467 0.7 0.596403
Target:  5'- --aCGCCGACGAccugcuGCUUGGCCuGcGCCa -3'
miRNA:   3'- ugaGCGGCUGUU------UGAAUCGG-CuUGGc -5'
26832 3' -51.8 NC_005809.1 + 679 0.66 0.843885
Target:  5'- gGC-CGCCuACGgcGGCgccGGCCGGGCCGc -3'
miRNA:   3'- -UGaGCGGcUGU--UUGaa-UCGGCUUGGC- -5'
26832 3' -51.8 NC_005809.1 + 23759 0.66 0.843885
Target:  5'- --aUGCCGGCGccACcgGGCCGAugCGc -3'
miRNA:   3'- ugaGCGGCUGUu-UGaaUCGGCUugGC- -5'
26832 3' -51.8 NC_005809.1 + 37964 0.66 0.843885
Target:  5'- --cCGCCGACAucauc-GCCGAgGCCGa -3'
miRNA:   3'- ugaGCGGCUGUuugaauCGGCU-UGGC- -5'
26832 3' -51.8 NC_005809.1 + 18035 0.7 0.585017
Target:  5'- uCUUGUCGGCGGGCUgcuugggGGCCuuACCGg -3'
miRNA:   3'- uGAGCGGCUGUUUGAa------UCGGcuUGGC- -5'
26832 3' -51.8 NC_005809.1 + 32706 0.66 0.852793
Target:  5'- uGCUCGCCGcgugcaauCAGGCgauggagGGCUGAcGCCa -3'
miRNA:   3'- -UGAGCGGCu-------GUUUGaa-----UCGGCU-UGGc -5'
26832 3' -51.8 NC_005809.1 + 11776 0.69 0.687781
Target:  5'- gAUUUGCCGGCAGAaugguGCCG-ACCa -3'
miRNA:   3'- -UGAGCGGCUGUUUgaau-CGGCuUGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.