Results 1 - 20 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26836 | 5' | -57.7 | NC_005809.1 | + | 3611 | 0.66 | 0.507312 |
Target: 5'- uUGAccGCGCAuuuuGCUucGCUGGCGGUgGUa -3' miRNA: 3'- -ACUu-CGCGUu---CGA--CGACUGCCGgCGg -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 17265 | 0.66 | 0.507312 |
Target: 5'- -cGAGCGCcGGUgGCagGGcCGGCCGCa -3' miRNA: 3'- acUUCGCGuUCGaCGa-CU-GCCGGCGg -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 23536 | 0.66 | 0.496798 |
Target: 5'- gGcGGCGCAcGCgGUcGAUGGCCucgGCCg -3' miRNA: 3'- aCuUCGCGUuCGaCGaCUGCCGG---CGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 13325 | 0.66 | 0.496798 |
Target: 5'- gGcGGCGUAGGCUuucGGCaGGUCGCCg -3' miRNA: 3'- aCuUCGCGUUCGAcgaCUG-CCGGCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 36743 | 0.66 | 0.496798 |
Target: 5'- cGAc-CGCAcGgUGCUG-CGGCaCGCCa -3' miRNA: 3'- aCUucGCGUuCgACGACuGCCG-GCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 19716 | 0.66 | 0.496798 |
Target: 5'- aGAAGCagcccaauucGCAGcGCgcGCUGuCGGCUGUCg -3' miRNA: 3'- aCUUCG----------CGUU-CGa-CGACuGCCGGCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 5133 | 0.66 | 0.486383 |
Target: 5'- uUGAAcUGCAAcguGCcGCgcaGGCGGCCGUCg -3' miRNA: 3'- -ACUUcGCGUU---CGaCGa--CUGCCGGCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 33969 | 0.66 | 0.486383 |
Target: 5'- aGAAGCGCAaccAGCUuauccaGCaccaGGCCGCa -3' miRNA: 3'- aCUUCGCGU---UCGA------CGacugCCGGCGg -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 24195 | 0.66 | 0.486383 |
Target: 5'- -uGAGCGCGAGCacGUaGGCG-CUGCCa -3' miRNA: 3'- acUUCGCGUUCGa-CGaCUGCcGGCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 21746 | 0.66 | 0.486383 |
Target: 5'- -uGGGCGC-GGCcGCguccacauagGACaGGCCGCCc -3' miRNA: 3'- acUUCGCGuUCGaCGa---------CUG-CCGGCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 39636 | 0.66 | 0.486383 |
Target: 5'- gUGccGCGCGAcGC-GgUGugGGCCGgCa -3' miRNA: 3'- -ACuuCGCGUU-CGaCgACugCCGGCgG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 14047 | 0.66 | 0.486383 |
Target: 5'- aUGGAGCGCGaaAGCccgGCgcugGGCGucGuuGCCu -3' miRNA: 3'- -ACUUCGCGU--UCGa--CGa---CUGC--CggCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 7829 | 0.66 | 0.486383 |
Target: 5'- cGAGGCGC-GGCUGCacgaUGACcaGGCgcaCGCg -3' miRNA: 3'- aCUUCGCGuUCGACG----ACUG--CCG---GCGg -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 21107 | 0.66 | 0.485347 |
Target: 5'- -uGAGCGCGuuuuGCUugcugguaucgacGCUGcccagcuUGGCCGCCg -3' miRNA: 3'- acUUCGCGUu---CGA-------------CGACu------GCCGGCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 36239 | 0.66 | 0.476072 |
Target: 5'- -cGGGCGCuuuGGCUGg-GGCGGaacgCGCCg -3' miRNA: 3'- acUUCGCGu--UCGACgaCUGCCg---GCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 26674 | 0.66 | 0.476072 |
Target: 5'- aGcAGCgGCAAGCUGCUG--GGCCucaccuacguGCCc -3' miRNA: 3'- aCuUCG-CGUUCGACGACugCCGG----------CGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 6175 | 0.66 | 0.469939 |
Target: 5'- --cAGCGCAGGCcggucuUGCcgcagcguuugcaggUGACGGCgCGCg -3' miRNA: 3'- acuUCGCGUUCG------ACG---------------ACUGCCG-GCGg -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 21822 | 0.66 | 0.465872 |
Target: 5'- uUGcAGCgGCGGGUUGCUcuuguagucGAUGGCCugcGCCu -3' miRNA: 3'- -ACuUCG-CGUUCGACGA---------CUGCCGG---CGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 22851 | 0.66 | 0.455786 |
Target: 5'- cGAcAGCGCGcGCUGC-GAauugGGCUGCUu -3' miRNA: 3'- aCU-UCGCGUuCGACGaCUg---CCGGCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 41532 | 0.66 | 0.455786 |
Target: 5'- cGcGGCGaCAuGCUGCcGcCGGCCGUg -3' miRNA: 3'- aCuUCGC-GUuCGACGaCuGCCGGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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