miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26838 3' -50.2 NC_005809.1 + 25098 0.66 0.900928
Target:  5'- uCGcCGCUGUUCGugcAGGCCcugGCGuggcaccuGGCCu -3'
miRNA:   3'- uGCuGCGAUAAGU---UCUGGa--CGU--------UCGG- -5'
26838 3' -50.2 NC_005809.1 + 16301 0.66 0.900928
Target:  5'- cGCGAUGCg---CGAG-CCgacCAGGCCg -3'
miRNA:   3'- -UGCUGCGauaaGUUCuGGac-GUUCGG- -5'
26838 3' -50.2 NC_005809.1 + 24951 0.66 0.893506
Target:  5'- cACGAUGCggcaaacaUCGAGGCCgGUAucgacaacgcgcAGCCg -3'
miRNA:   3'- -UGCUGCGaua-----AGUUCUGGaCGU------------UCGG- -5'
26838 3' -50.2 NC_005809.1 + 15209 0.66 0.893506
Target:  5'- cCGAaugGCUGgaCGAGugCUGCGaggucGGCCc -3'
miRNA:   3'- uGCUg--CGAUaaGUUCugGACGU-----UCGG- -5'
26838 3' -50.2 NC_005809.1 + 40136 0.66 0.893506
Target:  5'- gUGGCGCcgaucUUCGAGgccgGCCUGCu-GCCg -3'
miRNA:   3'- uGCUGCGau---AAGUUC----UGGACGuuCGG- -5'
26838 3' -50.2 NC_005809.1 + 24562 0.66 0.893506
Target:  5'- cGCGGCGaugg-CGAGGCCggccacgGuCGGGCCg -3'
miRNA:   3'- -UGCUGCgauaaGUUCUGGa------C-GUUCGG- -5'
26838 3' -50.2 NC_005809.1 + 11040 0.66 0.881015
Target:  5'- -aGGCGCUGUUuccacggcaacacagCGAGGCCcagcaGCAcGCCg -3'
miRNA:   3'- ugCUGCGAUAA---------------GUUCUGGa----CGUuCGG- -5'
26838 3' -50.2 NC_005809.1 + 9455 0.66 0.877776
Target:  5'- cACGGCGacAUUCAGGGCCUuggguucauggGCGaggauguaGGCCg -3'
miRNA:   3'- -UGCUGCgaUAAGUUCUGGA-----------CGU--------UCGG- -5'
26838 3' -50.2 NC_005809.1 + 31263 0.66 0.877776
Target:  5'- gGCGACGUgaUAUUCGuuGACCccgacgugGCAgcgaAGCCu -3'
miRNA:   3'- -UGCUGCG--AUAAGUu-CUGGa-------CGU----UCGG- -5'
26838 3' -50.2 NC_005809.1 + 36294 0.66 0.877776
Target:  5'- gGCGAC-CUGUUC--GGCCUGCccAGCg -3'
miRNA:   3'- -UGCUGcGAUAAGuuCUGGACGu-UCGg -5'
26838 3' -50.2 NC_005809.1 + 30279 0.66 0.86948
Target:  5'- cGCGAguCGCcggaaaacgUCGGGuagcgccCCUGCGAGCCg -3'
miRNA:   3'- -UGCU--GCGaua------AGUUCu------GGACGUUCGG- -5'
26838 3' -50.2 NC_005809.1 + 17827 0.66 0.86948
Target:  5'- cCGACaGCaugggUCGAGGCCgcGCAGGCg -3'
miRNA:   3'- uGCUG-CGaua--AGUUCUGGa-CGUUCGg -5'
26838 3' -50.2 NC_005809.1 + 23324 0.67 0.860906
Target:  5'- uCGACGCcgagaaGUUCAuGGGCCUGac-GCCg -3'
miRNA:   3'- uGCUGCGa-----UAAGU-UCUGGACguuCGG- -5'
26838 3' -50.2 NC_005809.1 + 18310 0.67 0.860906
Target:  5'- cCGGCGCcacgcUCAAGGug-GCAAGCCg -3'
miRNA:   3'- uGCUGCGaua--AGUUCUggaCGUUCGG- -5'
26838 3' -50.2 NC_005809.1 + 2113 0.67 0.860906
Target:  5'- aAUGACGCUGcUUCAAuucauCgUGCAgcAGCCg -3'
miRNA:   3'- -UGCUGCGAU-AAGUUcu---GgACGU--UCGG- -5'
26838 3' -50.2 NC_005809.1 + 16253 0.67 0.860906
Target:  5'- cGCGguGCGCg--UCAAGACCgUGCcuGUCc -3'
miRNA:   3'- -UGC--UGCGauaAGUUCUGG-ACGuuCGG- -5'
26838 3' -50.2 NC_005809.1 + 7194 0.67 0.851165
Target:  5'- gGCGACGCUGggcuugccaUCGgacugcgugaugaAGcCCUGCAacuucGGCCa -3'
miRNA:   3'- -UGCUGCGAUa--------AGU-------------UCuGGACGU-----UCGG- -5'
26838 3' -50.2 NC_005809.1 + 40085 0.67 0.842961
Target:  5'- uCGGCGCUcgaAUUCaAAGACCgccuugUGCAGcacGCCu -3'
miRNA:   3'- uGCUGCGA---UAAG-UUCUGG------ACGUU---CGG- -5'
26838 3' -50.2 NC_005809.1 + 6224 0.67 0.842961
Target:  5'- uGCGuuuUGCcuucggcCAGGGCCUGCAcGCCg -3'
miRNA:   3'- -UGCu--GCGauaa---GUUCUGGACGUuCGG- -5'
26838 3' -50.2 NC_005809.1 + 13766 0.67 0.83361
Target:  5'- gACGGCGCgcuggcugcUCAAGAUCggcaaccaggGCAAGCg -3'
miRNA:   3'- -UGCUGCGaua------AGUUCUGGa---------CGUUCGg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.