miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26843 3' -60.5 NC_005809.1 + 28362 0.66 0.401245
Target:  5'- aGCGCGCggaugguuuccuugGCGAgGUGUuccaguucgacgccgGCGGcGCGGCgCCa -3'
miRNA:   3'- -CGCGUG--------------CGUUgCACG---------------CGUC-CGCCG-GG- -5'
26843 3' -60.5 NC_005809.1 + 18415 0.66 0.400343
Target:  5'- -aGCGCGCAGCcgucgagGCGCuGGGCcaGGCgCg -3'
miRNA:   3'- cgCGUGCGUUGca-----CGCG-UCCG--CCGgG- -5'
26843 3' -60.5 NC_005809.1 + 17634 0.66 0.400343
Target:  5'- uUGC-CGCAuCGUGCgGCAGuaCGGCCa -3'
miRNA:   3'- cGCGuGCGUuGCACG-CGUCc-GCCGGg -5'
26843 3' -60.5 NC_005809.1 + 14905 0.66 0.400343
Target:  5'- uGCGCG-GCGAUcUGCuGCuGGCcGGCCUc -3'
miRNA:   3'- -CGCGUgCGUUGcACG-CGuCCG-CCGGG- -5'
26843 3' -60.5 NC_005809.1 + 16789 0.66 0.400343
Target:  5'- -aGCGCGC--CGcGCGCAucGCGGCCa -3'
miRNA:   3'- cgCGUGCGuuGCaCGCGUc-CGCCGGg -5'
26843 3' -60.5 NC_005809.1 + 32038 0.66 0.400343
Target:  5'- uUGCGCGUGGCG-GCGgaaAGcGUGGCCg -3'
miRNA:   3'- cGCGUGCGUUGCaCGCg--UC-CGCCGGg -5'
26843 3' -60.5 NC_005809.1 + 26735 0.66 0.398545
Target:  5'- -aGCACGacacggaCGGCGUguucgaguccugcGCGguGGUGGCCg -3'
miRNA:   3'- cgCGUGC-------GUUGCA-------------CGCguCCGCCGGg -5'
26843 3' -60.5 NC_005809.1 + 20704 0.66 0.397647
Target:  5'- cGUGCGCcagcuacaacaugaGCAAC-UGCGCaAGGCgcaGGCCa -3'
miRNA:   3'- -CGCGUG--------------CGUUGcACGCG-UCCG---CCGGg -5'
26843 3' -60.5 NC_005809.1 + 2226 0.66 0.391402
Target:  5'- -aGCAC-C-ACGcGCaGCAGGCGGCgCg -3'
miRNA:   3'- cgCGUGcGuUGCaCG-CGUCCGCCGgG- -5'
26843 3' -60.5 NC_005809.1 + 38132 0.66 0.391402
Target:  5'- cCGCACGCcuGGCG-GUGUu-GCGGCCg -3'
miRNA:   3'- cGCGUGCG--UUGCaCGCGucCGCCGGg -5'
26843 3' -60.5 NC_005809.1 + 14386 0.66 0.382591
Target:  5'- cGCGCcgcggaacguagGCGUAGCGaagcuggGCGUcgccAGGCGcGCCUg -3'
miRNA:   3'- -CGCG------------UGCGUUGCa------CGCG----UCCGC-CGGG- -5'
26843 3' -60.5 NC_005809.1 + 25194 0.66 0.382591
Target:  5'- uGCGUcgGCGCGAUGcaggcauaccUGuCGCAGGCGaugguGUCCg -3'
miRNA:   3'- -CGCG--UGCGUUGC----------AC-GCGUCCGC-----CGGG- -5'
26843 3' -60.5 NC_005809.1 + 12442 0.66 0.382591
Target:  5'- gGUGCAgGcCGGCG-GCGUguucuGGcGCGGCCUc -3'
miRNA:   3'- -CGCGUgC-GUUGCaCGCG-----UC-CGCCGGG- -5'
26843 3' -60.5 NC_005809.1 + 17495 0.66 0.382591
Target:  5'- cGgGCGCGCuGCGcUG-GguGGCGaugcuGCCCg -3'
miRNA:   3'- -CgCGUGCGuUGC-ACgCguCCGC-----CGGG- -5'
26843 3' -60.5 NC_005809.1 + 12286 0.66 0.382591
Target:  5'- uUGCugGCccAGCGUGCcgGCuacGGCGGCg- -3'
miRNA:   3'- cGCGugCG--UUGCACG--CGu--CCGCCGgg -5'
26843 3' -60.5 NC_005809.1 + 39026 0.66 0.382591
Target:  5'- gGCGCgguugGCGgGAC-UGCGCGGuguGCGGCUg -3'
miRNA:   3'- -CGCG-----UGCgUUGcACGCGUC---CGCCGGg -5'
26843 3' -60.5 NC_005809.1 + 24623 0.66 0.382591
Target:  5'- aGCgGCACGUcgaaccacauGGCGUGC-C-GGCGGgCCa -3'
miRNA:   3'- -CG-CGUGCG----------UUGCACGcGuCCGCCgGG- -5'
26843 3' -60.5 NC_005809.1 + 1687 0.66 0.381717
Target:  5'- cGCGCAgGUAGucgagaaauucgcCGUGgGCcGGCGuGCCg -3'
miRNA:   3'- -CGCGUgCGUU-------------GCACgCGuCCGC-CGGg -5'
26843 3' -60.5 NC_005809.1 + 42119 0.66 0.373913
Target:  5'- aGCGCcCGCAAgcUGgccGCGCAG-CaGCCCa -3'
miRNA:   3'- -CGCGuGCGUU--GCa--CGCGUCcGcCGGG- -5'
26843 3' -60.5 NC_005809.1 + 17802 0.66 0.373053
Target:  5'- aGCGCGCGCAguauuccgccugcACGgaacccucGgGCGGGUugauGCCCg -3'
miRNA:   3'- -CGCGUGCGU-------------UGCa-------CgCGUCCGc---CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.