miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26857 5' -52.9 NC_005809.1 + 23655 0.83 0.091372
Target:  5'- aAACGCCAGCGCGGGCGCCGaccucaUCGAc- -3'
miRNA:   3'- gUUGUGGUUGCGCCUGUGGU------AGCUca -5'
26857 5' -52.9 NC_005809.1 + 31498 0.68 0.646412
Target:  5'- -cGCGCgCGACcCGGACACguUCGAGc -3'
miRNA:   3'- guUGUG-GUUGcGCCUGUGguAGCUCa -5'
26857 5' -52.9 NC_005809.1 + 8443 0.68 0.657785
Target:  5'- gAACAUCGGCGCGauguCGgCGUCGAGg -3'
miRNA:   3'- gUUGUGGUUGCGCcu--GUgGUAGCUCa -5'
26857 5' -52.9 NC_005809.1 + 29828 0.66 0.788778
Target:  5'- -cGCGCCAagcgucuggGCGCGGcacccaGCACCAaCGGGc -3'
miRNA:   3'- guUGUGGU---------UGCGCC------UGUGGUaGCUCa -5'
26857 5' -52.9 NC_005809.1 + 36994 0.72 0.409075
Target:  5'- uCGACACgGugGCGGccagcguugGCGCCGUCGAu- -3'
miRNA:   3'- -GUUGUGgUugCGCC---------UGUGGUAGCUca -5'
26857 5' -52.9 NC_005809.1 + 2854 0.72 0.418771
Target:  5'- cCAGCACCAGCGagGGGCcugguucgACCAguUCGAGg -3'
miRNA:   3'- -GUUGUGGUUGCg-CCUG--------UGGU--AGCUCa -5'
26857 5' -52.9 NC_005809.1 + 25012 0.7 0.511779
Target:  5'- aCAACACCGGCGCcGACAUCAUUc--- -3'
miRNA:   3'- -GUUGUGGUUGCGcCUGUGGUAGcuca -5'
26857 5' -52.9 NC_005809.1 + 25964 0.7 0.511779
Target:  5'- --uCACCAACgGCGGcgccaACACCAUCGcGUg -3'
miRNA:   3'- guuGUGGUUG-CGCC-----UGUGGUAGCuCA- -5'
26857 5' -52.9 NC_005809.1 + 29402 0.7 0.543581
Target:  5'- gGGCGCCcAGCGCGGccgACACuggccgaCAUCGAGg -3'
miRNA:   3'- gUUGUGG-UUGCGCC---UGUG-------GUAGCUCa -5'
26857 5' -52.9 NC_005809.1 + 17783 0.68 0.646412
Target:  5'- gCGACuuCAACGCGGGCA---UCGAGg -3'
miRNA:   3'- -GUUGugGUUGCGCCUGUgguAGCUCa -5'
26857 5' -52.9 NC_005809.1 + 18407 0.7 0.555818
Target:  5'- -cACGCCGaaGCGCGca-GCCGUCGAGg -3'
miRNA:   3'- guUGUGGU--UGCGCcugUGGUAGCUCa -5'
26857 5' -52.9 NC_005809.1 + 18310 0.7 0.527042
Target:  5'- cCGGCGCCAcgcucaagguggcaaGcCGCgaGGACAUCAUCGAGa -3'
miRNA:   3'- -GUUGUGGU---------------U-GCG--CCUGUGGUAGCUCa -5'
26857 5' -52.9 NC_005809.1 + 38241 0.75 0.281525
Target:  5'- cCAGCAUCAAgGCuGGCACCAUCGuGg -3'
miRNA:   3'- -GUUGUGGUUgCGcCUGUGGUAGCuCa -5'
26857 5' -52.9 NC_005809.1 + 36958 0.69 0.589555
Target:  5'- cCAACAUCGACGcCGuGGCuACCAaCGAGg -3'
miRNA:   3'- -GUUGUGGUUGC-GC-CUG-UGGUaGCUCa -5'
26857 5' -52.9 NC_005809.1 + 14748 0.74 0.336776
Target:  5'- cCGGCGCCAcCGCGGGCAgCGcgcgCGAGg -3'
miRNA:   3'- -GUUGUGGUuGCGCCUGUgGUa---GCUCa -5'
26857 5' -52.9 NC_005809.1 + 24176 0.7 0.522664
Target:  5'- --uCGCCGACGUGGccgccaccgGCGCCAUCGGc- -3'
miRNA:   3'- guuGUGGUUGCGCC---------UGUGGUAGCUca -5'
26857 5' -52.9 NC_005809.1 + 5108 0.69 0.600889
Target:  5'- cCAGCGuCCggUGCGGcugGCGCCGUUGAa- -3'
miRNA:   3'- -GUUGU-GGuuGCGCC---UGUGGUAGCUca -5'
26857 5' -52.9 NC_005809.1 + 33988 0.68 0.646412
Target:  5'- cCAGCACCAggccgcacGCGCGGccuacgACGCCcaggaugagGUCGAGc -3'
miRNA:   3'- -GUUGUGGU--------UGCGCC------UGUGG---------UAGCUCa -5'
26857 5' -52.9 NC_005809.1 + 17012 0.72 0.409075
Target:  5'- aCAACuCCGACGCcGACAUCAUCGGc- -3'
miRNA:   3'- -GUUGuGGUUGCGcCUGUGGUAGCUca -5'
26857 5' -52.9 NC_005809.1 + 27585 0.71 0.458901
Target:  5'- gCAACGCCAAUGCcGACGCCAUUc--- -3'
miRNA:   3'- -GUUGUGGUUGCGcCUGUGGUAGcuca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.