miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26858 5' -55.6 NC_005809.1 + 25288 0.66 0.634165
Target:  5'- gCGCccGCGGCGCCGgcuuCgUGGACg -3'
miRNA:   3'- aGUGacUGCCGCGGUaacuGgACCUG- -5'
26858 5' -55.6 NC_005809.1 + 8451 0.66 0.634165
Target:  5'- gCGCgaUGuCGGCGUCGaggUGGCCUGcGAUg -3'
miRNA:   3'- aGUG--ACuGCCGCGGUa--ACUGGAC-CUG- -5'
26858 5' -55.6 NC_005809.1 + 9317 0.66 0.634165
Target:  5'- aC-CUGGCGGCGCaCGUcGGCgCggcGGGCg -3'
miRNA:   3'- aGuGACUGCCGCG-GUAaCUG-Ga--CCUG- -5'
26858 5' -55.6 NC_005809.1 + 17881 0.66 0.622914
Target:  5'- gCACcGAUGGacaGCCug-GGCgUGGACg -3'
miRNA:   3'- aGUGaCUGCCg--CGGuaaCUGgACCUG- -5'
26858 5' -55.6 NC_005809.1 + 24267 0.66 0.622914
Target:  5'- cCACcuUGAgcgUGGCGCCGgacagUGACCacguggGGGCg -3'
miRNA:   3'- aGUG--ACU---GCCGCGGUa----ACUGGa-----CCUG- -5'
26858 5' -55.6 NC_005809.1 + 34677 0.66 0.622914
Target:  5'- -aGCUGGCGaucuacgcacGCGCCGc---CCUGGACg -3'
miRNA:   3'- agUGACUGC----------CGCGGUaacuGGACCUG- -5'
26858 5' -55.6 NC_005809.1 + 16744 0.66 0.611671
Target:  5'- -aACUGAcCGGCGCCAacggcGGCCcGGuGCa -3'
miRNA:   3'- agUGACU-GCCGCGGUaa---CUGGaCC-UG- -5'
26858 5' -55.6 NC_005809.1 + 37460 0.66 0.578092
Target:  5'- uUCA---ACGGCGCCAgccgcaccgGACgCUGGGCc -3'
miRNA:   3'- -AGUgacUGCCGCGGUaa-------CUG-GACCUG- -5'
26858 5' -55.6 NC_005809.1 + 14318 0.66 0.578092
Target:  5'- -aACUGGCGcGCGCC-UUGGCUgaacugccGGGCc -3'
miRNA:   3'- agUGACUGC-CGCGGuAACUGGa-------CCUG- -5'
26858 5' -55.6 NC_005809.1 + 18862 0.66 0.578092
Target:  5'- gCACUGGCccgcgaccugGGCGCUAccGGCCUGuACg -3'
miRNA:   3'- aGUGACUG----------CCGCGGUaaCUGGACcUG- -5'
26858 5' -55.6 NC_005809.1 + 18302 0.67 0.56698
Target:  5'- gUCACUGucCGGCGCCAcgcucaaggUGgcaaGCCgcgaGGACa -3'
miRNA:   3'- -AGUGACu-GCCGCGGUa--------AC----UGGa---CCUG- -5'
26858 5' -55.6 NC_005809.1 + 42459 0.67 0.544931
Target:  5'- aCGCgaagugguugGACGGCGCgCAgaacGAUCUGGAa -3'
miRNA:   3'- aGUGa---------CUGCCGCG-GUaa--CUGGACCUg -5'
26858 5' -55.6 NC_005809.1 + 13518 0.67 0.544931
Target:  5'- cCGCUGAUGGCcuacgagccGCCGguggguaucGACCUGGcCg -3'
miRNA:   3'- aGUGACUGCCG---------CGGUaa-------CUGGACCuG- -5'
26858 5' -55.6 NC_005809.1 + 15121 0.67 0.534009
Target:  5'- gCGCUGGCauaccaGCGCCAg-GGCCUGcGGCc -3'
miRNA:   3'- aGUGACUGc-----CGCGGUaaCUGGAC-CUG- -5'
26858 5' -55.6 NC_005809.1 + 35386 0.67 0.532921
Target:  5'- gCGCUGucccggcugcgucAgGGCGUCAgcgcgucgGGCCUGGGCu -3'
miRNA:   3'- aGUGAC-------------UgCCGCGGUaa------CUGGACCUG- -5'
26858 5' -55.6 NC_005809.1 + 2841 0.67 0.518852
Target:  5'- aCGCgcaGCGGCGCCAgcaccagcgaggGGCCUGGu- -3'
miRNA:   3'- aGUGac-UGCCGCGGUaa----------CUGGACCug -5'
26858 5' -55.6 NC_005809.1 + 40432 0.67 0.512409
Target:  5'- gUAC-GGCGGCGCgGUUGACC-GGcuGCu -3'
miRNA:   3'- aGUGaCUGCCGCGgUAACUGGaCC--UG- -5'
26858 5' -55.6 NC_005809.1 + 34384 0.67 0.512409
Target:  5'- gUCGCUGACgaacgggcaGGaCGCCAgcgccuuCCUGGGCc -3'
miRNA:   3'- -AGUGACUG---------CC-GCGGUaacu---GGACCUG- -5'
26858 5' -55.6 NC_005809.1 + 30517 0.68 0.501743
Target:  5'- aCACcauCGGCGCCAUcGACUucgacacgcUGGGCa -3'
miRNA:   3'- aGUGacuGCCGCGGUAaCUGG---------ACCUG- -5'
26858 5' -55.6 NC_005809.1 + 27734 0.68 0.501743
Target:  5'- gCGCUGGC--CGCCAacggcaucGACCUGGGCg -3'
miRNA:   3'- aGUGACUGccGCGGUaa------CUGGACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.