miRNA display CGI


Results 1 - 20 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2686 3' -61.9 NC_001491.2 + 39589 0.66 0.665842
Target:  5'- aUCcGCuagGCGGCGC-GGCAAUGUGCuUCu -3'
miRNA:   3'- -AGaCG---CGCCGCGaCCGUUGCGCGcGG- -5'
2686 3' -61.9 NC_001491.2 + 80713 0.66 0.665842
Target:  5'- -aUGCG-GGUGUugcgGGUAACGCGUuuaucGCCa -3'
miRNA:   3'- agACGCgCCGCGa---CCGUUGCGCG-----CGG- -5'
2686 3' -61.9 NC_001491.2 + 68905 0.66 0.665842
Target:  5'- ----gGCGGCcugGCcgugGGCAACGCcCGCCg -3'
miRNA:   3'- agacgCGCCG---CGa---CCGUUGCGcGCGG- -5'
2686 3' -61.9 NC_001491.2 + 114716 0.66 0.665842
Target:  5'- gUCguuCG-GGCaCUGGC-AUGCGCGCCc -3'
miRNA:   3'- -AGac-GCgCCGcGACCGuUGCGCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 95559 0.66 0.646152
Target:  5'- aCUGCGCGcacaGCUcGGCuuugAGCGCG-GCCc -3'
miRNA:   3'- aGACGCGCcg--CGA-CCG----UUGCGCgCGG- -5'
2686 3' -61.9 NC_001491.2 + 136878 0.66 0.646152
Target:  5'- --aGUGCGGaCGC-GGCAucgcucGCGUGUGCg -3'
miRNA:   3'- agaCGCGCC-GCGaCCGU------UGCGCGCGg -5'
2686 3' -61.9 NC_001491.2 + 10147 0.66 0.636288
Target:  5'- --cGCGgaGGC-CUGGCcGCGCGUGUa -3'
miRNA:   3'- agaCGCg-CCGcGACCGuUGCGCGCGg -5'
2686 3' -61.9 NC_001491.2 + 1432 0.66 0.636288
Target:  5'- gUCgaccCGCGGgGCUcGGCGGCGgGgaGCCu -3'
miRNA:   3'- -AGac--GCGCCgCGA-CCGUUGCgCg-CGG- -5'
2686 3' -61.9 NC_001491.2 + 35727 0.66 0.62642
Target:  5'- uUCUGCcggGUGGCGCUGcuGgAGCcCGaCGCCg -3'
miRNA:   3'- -AGACG---CGCCGCGAC--CgUUGcGC-GCGG- -5'
2686 3' -61.9 NC_001491.2 + 67813 0.66 0.616557
Target:  5'- --aGgGCGGCgGCUaucauuuuguugGGCAGCaCGCGCUg -3'
miRNA:   3'- agaCgCGCCG-CGA------------CCGUUGcGCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 144414 0.66 0.615572
Target:  5'- gUUGUGagcuucuCGGCGUccccGCAGCGCGCGCa -3'
miRNA:   3'- aGACGC-------GCCGCGac--CGUUGCGCGCGg -5'
2686 3' -61.9 NC_001491.2 + 1642 0.67 0.606705
Target:  5'- --cGCGCGGU---GGCucuGCGCgGCGCCc -3'
miRNA:   3'- agaCGCGCCGcgaCCGu--UGCG-CGCGG- -5'
2686 3' -61.9 NC_001491.2 + 64224 0.67 0.600802
Target:  5'- cUCgGCaGCGGCGUcaaacgcggccacgGGCGGCGgCGUGUCg -3'
miRNA:   3'- -AGaCG-CGCCGCGa-------------CCGUUGC-GCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 77359 0.67 0.596871
Target:  5'- --aGCGaGGCGUcuuugugGGCGG-GCGCGCCu -3'
miRNA:   3'- agaCGCgCCGCGa------CCGUUgCGCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 51750 0.67 0.596871
Target:  5'- --gGUGgGGUGUUGGCcACGUGC-CCu -3'
miRNA:   3'- agaCGCgCCGCGACCGuUGCGCGcGG- -5'
2686 3' -61.9 NC_001491.2 + 51502 0.67 0.595888
Target:  5'- uUCUGaGCGGCGCuucuuagcuccucUGcGUAAaccaGCGCGUCg -3'
miRNA:   3'- -AGACgCGCCGCG-------------AC-CGUUg---CGCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 131628 0.67 0.595888
Target:  5'- cUCUGCGC--CGCUGGacuCGCggagguaGCGCCa -3'
miRNA:   3'- -AGACGCGccGCGACCguuGCG-------CGCGG- -5'
2686 3' -61.9 NC_001491.2 + 5520 0.67 0.586081
Target:  5'- gUCggGCGCGGCggGCUGGgugaaccccucuuCGGC-CGCGCUg -3'
miRNA:   3'- -AGa-CGCGCCG--CGACC-------------GUUGcGCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 4792 0.67 0.557835
Target:  5'- --cGgGCGGC--UGGgAGCGgGCGCCg -3'
miRNA:   3'- agaCgCGCCGcgACCgUUGCgCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 12548 0.68 0.548181
Target:  5'- --aGCG-GGCGC-GGgAGCGCgcgaGCGCCg -3'
miRNA:   3'- agaCGCgCCGCGaCCgUUGCG----CGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.